Glyma06g11030 - SoyBase

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Report for Sequence Feature Glyma06g11030

Feature Type:	gene_model
Chromosome:	Gm06
Start:	8403554
stop:	8408794
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g11030

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G78070	AT	Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein \| chr1:29355219-29358368 FORWARD LENGTH=449	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0080008	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG4532	KOG	WD40-like repeat containing protein	JGI		ISS
PTHR22847	Panther	WD40 REPEAT PROTEIN	JGI		ISS
PTHR22847:SF188	Panther	WD-40 REPEAT FAMILY PROTEIN	JGI		ISS
PF00400	PFAM	WD domain, G-beta repeat	JGI		ISS
UniRef100_G8A379	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: WD-40 repeat family n=1 Tax=Medicago truncatula RepID=G8A379_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1KA10	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KA10_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g11030

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g11030

Paralog	Evidence	Comments
Glyma04g11330	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g11030 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g105200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g11030

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g11030

Limit To All Plant Sequences

>Glyma06g11030.2   sequence type=transcript   gene model=Glyma06g11030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTCCTTTTGGCTAACCATGGAGCACTTCAACCATGACGATCTCGAATACATCGTCCACTTCCAAGACGATTTTCCGACGACTGATACCACTTGTTCGGAAGCCAGAAACGGGAAAGATATTCAGGGAATCCCCTGGGAGAGGCTTAACTATAGCAGAGACAAATACCGTGAGACCAGACTCAAGCAATACAAAAATTACCAGAACTTCTCTCTCTCTCCTCACCACCTCCACAAGGAGTGTTTCCAAGTGCAGAAGGGGCAAACTTTCTATGACTTCTTCTTCAATACCAGGCTTGTCAAATCCACAATTGTCCACTTTCAGCTGAGGAATTTGTTGTGGGCAACTTCAAAGCATGATGTATACCTTATGCAAAATTATTCAGTGATGCACTGGTCCGCATTACTACAAAGAAGTAAAGAAGTGCTTAACGTAGCCAAACCAATTATTCCAACCCTTACGCATCCTGGATTCTTAGCTCAGCCTGTCTCCAGAGTGCAAATAAGCACCATGACTGTTAAGGAAAATCTGATGGTGGCAGGTGGTTTCCAGGGTGAGCTTATATGCAAGAATTTGAAGCAACCTGGAGTTCTATTCTGTGGTAAAATAACTACAGATGGTAATGCCATAACCAATGCCGTGGATGTTTACCGCAATCCAGCTGGGTCGTTGAGGGTAATCACAGCAAATAATGATTCCCAACTTCGGGTTTTTGATGCAGAGAATTTTGCTTCTCTTGGTTGTTTCAAGTATGATTGGTCTGTTAATAACACTTCTATTAGTCCGGATGGAAGGTTGTTAGCTGTTCTTGGGGACAGTACTGAGTGCTTGATGGCTGATGCTAACTCTGGAAAGCTTGGCACCCAAATGGACAAATATTGGCCACTGGGAATCAGGACAAAACATGCAGGTTGTGGGACATAAGAAATCTTTCACAATCTATGGCTGTGTTAAAGGGAAGAATGGGTGCAATAAGAGCACTAAGATTCACTTCGGACGGACGATTTTTGGCCATGGCTGAACCTGCAGACTTCGTCCATATTTTTGACTCACATTCAGGTTATGAACAAGGTCAAGAGATTGACCTATTTGGTGAGATTGCTGGCATATCCTTTAGCCCAGACACAGAAGCTCTATTTGTGGGTATTGCTGACCGAACCTATGGTAGCTTGTTAGAGTTCAACAGAAAACGTCACTATAATTACCTAGACTCGTTTTGATGGAGTGGAGTGCCTCAAGATGTACAGCAATCTACTCCATGTGCATATCCACCAGAGGATTTCTAAAATAGGTTTAAAATATATATGGTGAAGTGTTTTTCTAGGGTTATTTTTCTGTTGAATTTAGTGGAGAAGCAAGTTGTAAATTTTGGCTCTAGGAAGCTATTTTTGTTTCTTTAATTTCAATTTTATTAGCGATAGAATAGCTGATTAGTCTTGCCTTTGTAAGAATTTCCTTGCATGCTATTGTGTATTAAAAACAATAGCAATATATTGCTTTAAACTTATTTTTCCCATACGATCTTCCTGTTCTTTGTATGTCTCGCGTTATAATGTTCTCACTTGAGAATTAATGTGTATTAGAATAATGACAAGGGATGGACTATTGACTCTTTTTTTTTTAATATTATTAATTATTTCTA

Coding sequences of Glyma06g11030

Limit To All Plant Sequences

>Glyma06g11030.1   sequence type=CDS   gene model=Glyma06g11030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCACTTCAACCATGACGATCTCGAATACATCGTCCACTTCCAAGACGATTTTCCGACGACTGATACCACTTGTTCGGAAGCCAGAAACGGGAAAGATATTCAGGGAATCCCCTGGGAGAGGCTTAACTATAGCAGAGACAAATACCGTGAGACCAGACTCAAGCAATACAAAAATTACCAGAACTTCTCTCTCTCTCCTCACCACCTCCACAAGGAGTGTTTCCAAGTGCAGAAGGGGCAAACTTTCTATGACTTCTTCTTCAATACCAGGCTTGTCAAATCCACAATTGTCCACTTTCAGCTGAGGAATTTGTTGTGGGCAACTTCAAAGCATGATGTATACCTTATGCAAAATTATTCAGTGATGCACTGGTCCGCATTACTACAAAGAAGTAAAGAAGTGCTTAACGTAGCCAAACCAATTATTCCAACCCTTACGCATCCTGGATTCTTAGCTCAGCCTGTCTCCAGAGTGCAAATAAGCACCATGACTGTTAAGGAAAATCTGATGGTGGCAGGTGGTTTCCAGGGTGAGCTTATATGCAAGAATTTGAAGCAACCTGGAGTTCTATTCTGTGGTAAAATAACTACAGATGGTAATGCCATAACCAATGCCGTGGATGTTTACCGCAATCCAGCTGGGTCGTTGAGGGTAATCACAGCAAATAATGATTCCCAACTTCGGGTTTTTGATGCAGAGAATTTTGCTTCTCTTGGTTGTTTCAAGTATGATTGGTCTGTTAATAACACTTCTATTAGTCCGGATGGAAGGTTGTTAGCTGTTCTTGGGGACAGTACTGAGTGCTTGATGGCTGATGCTAACTCTGGAAAGATTACTGGGAGCCTAAAGGGGCACTTGGACTACTCTTTTTCATCAGCTTGGCACCCAAATGGACAAATATTGGCCACTGGGAATCAGGACAAAACATGCAGGTTGTGGGACATAAGAAATCTTTCACAATCTATGGCTGTGTTAAAGGGAAGAATGGGTGCAATAAGAGCACTAAGATTCACTTCGGACGGACGATTTTTGGCCATGGCTGAACCTGCAGACTTCGTCCATATTTTTGACTCACATTCAGGTTATGAACAAGGTCAAGAGATTGACCTATTTGGTGAGATTGCTGGCATATCCTTTAGCCCAGACACAGAAGCTCTATTTGTGGGTATTGCTGACCGAACCTATGGTAGCTTGTTAGAGTTCAACAGAAAACGTCACTATAATTACCTAGACTCGTTTTGA

>Glyma06g11030.2   sequence type=CDS   gene model=Glyma06g11030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGCACTTCAACCATGACGATCTCGAATACATCGTCCACTTCCAAGACGATTTTCCGACGACTGATACCACTTGTTCGGAAGCCAGAAACGGGAAAGATATTCAGGGAATCCCCTGGGAGAGGCTTAACTATAGCAGAGACAAATACCGTGAGACCAGACTCAAGCAATACAAAAATTACCAGAACTTCTCTCTCTCTCCTCACCACCTCCACAAGGAGTGTTTCCAAGTGCAGAAGGGGCAAACTTTCTATGACTTCTTCTTCAATACCAGGCTTGTCAAATCCACAATTGTCCACTTTCAGCTGAGGAATTTGTTGTGGGCAACTTCAAAGCATGATGTATACCTTATGCAAAATTATTCAGTGATGCACTGGTCCGCATTACTACAAAGAAGTAAAGAAGTGCTTAACGTAGCCAAACCAATTATTCCAACCCTTACGCATCCTGGATTCTTAGCTCAGCCTGTCTCCAGAGTGCAAATAAGCACCATGACTGTTAAGGAAAATCTGATGGTGGCAGGTGGTTTCCAGGGTGAGCTTATATGCAAGAATTTGAAGCAACCTGGAGTTCTATTCTGTGGTAAAATAACTACAGATGGTAATGCCATAACCAATGCCGTGGATGTTTACCGCAATCCAGCTGGGTCGTTGAGGGTAATCACAGCAAATAATGATTCCCAACTTCGGGTTTTTGATGCAGAGAATTTTGCTTCTCTTGGTTGTTTCAAGTATGATTGGTCTGTTAATAACACTTCTATTAGTCCGGATGGAAGGTTGTTAGCTGTTCTTGGGGACAGTACTGAGTGCTTGATGGCTGATGCTAACTCTGGAAAGCTTGGCACCCAAATGGACAAATATTGGCCACTGGGAATCAGGACAAAACATGCAGGTTGTGGGACATAA

Predicted protein sequences of Glyma06g11030

Limit To All Plant Sequences

>Glyma06g11030.1   sequence type=predicted peptide   gene model=Glyma06g11030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEHFNHDDLEYIVHFQDDFPTTDTTCSEARNGKDIQGIPWERLNYSRDKYRETRLKQYKNYQNFSLSPHHLHKECFQVQKGQTFYDFFFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSALLQRSKEVLNVAKPIIPTLTHPGFLAQPVSRVQISTMTVKENLMVAGGFQGELICKNLKQPGVLFCGKITTDGNAITNAVDVYRNPAGSLRVITANNDSQLRVFDAENFASLGCFKYDWSVNNTSISPDGRLLAVLGDSTECLMADANSGKITGSLKGHLDYSFSSAWHPNGQILATGNQDKTCRLWDIRNLSQSMAVLKGRMGAIRALRFTSDGRFLAMAEPADFVHIFDSHSGYEQGQEIDLFGEIAGISFSPDTEALFVGIADRTYGSLLEFNRKRHYNYLDSF*

>Glyma06g11030.2   sequence type=predicted peptide   gene model=Glyma06g11030   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEHFNHDDLEYIVHFQDDFPTTDTTCSEARNGKDIQGIPWERLNYSRDKYRETRLKQYKNYQNFSLSPHHLHKECFQVQKGQTFYDFFFNTRLVKSTIVHFQLRNLLWATSKHDVYLMQNYSVMHWSALLQRSKEVLNVAKPIIPTLTHPGFLAQPVSRVQISTMTVKENLMVAGGFQGELICKNLKQPGVLFCGKITTDGNAITNAVDVYRNPAGSLRVITANNDSQLRVFDAENFASLGCFKYDWSVNNTSISPDGRLLAVLGDSTECLMADANSGKLGTQMDKYWPLGIRTKHAGCGT*

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