Report for Sequence Feature Glyma06g11020
Feature Type: gene_model
Chromosome: Gm06
Start: 8397428
stop: 8399877
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g11020
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G38260 AT
Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF833) | chr4:17937077-17938210 REVERSE LENGTH=275
SoyBase E_val: 1.00E-84 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2342
KOG
Uncharacterized conserved protein
JGI ISS
PTHR17985 Panther
SER/THR-RICH PROTEIN T10 IN DGCR REGION
JGI ISS
PF05742 PFAM
Protein of unknown function (DUF833)
JGI ISS
UniRef100_G8A381 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Ser/Thr-rich protein T10 in DGCR region n=1 Tax=Medicago truncatula RepID=G8A381_MEDTR
SoyBase E_val: 3.00E-143 ISS
UniRef100_UPI00023395AB UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI00023395AB related cluster n=1 Tax=unknown RepID=UPI00023395AB
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g11020
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g11020
Paralog Evidence Comments
Glyma04g11310 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g11020 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g105100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g11020
Coding sequences of Glyma06g11020
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g11020.1 sequence type=CDS gene model=Glyma06g11020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTGTATAGCTTTGTTTCTTTGGCAATGCCACCCACTGCCTACGAAGCCAGTGTCTTGGTGGGAAGATTGTGATATTTTGGCAGGAAGGGACGAAATAGCAATGGGAACATGGTTGGCTTGTTCCACACAAGGAAGGGTGGCTTTTCTCACCAATGTTTTGGAGCTTCATACCCTCCCTGAGGCCAAAAGTCGTGGAGACCTACCCGTACTATTTCTCAAGAGCAGCAAGAAACCGAAAGAATTTGCGGAAAGCCTAAAATTAGAGGCTCATTATTACAACGGGTTCAACATAGTTGTGGCTGATATTGTGTCGAAATCAATGGTGTACATCTCCAACAGGCCCAAGGGACAACCTATTACCATTAAAGAGGTTCCACCAGGCCTGCATGTACTTTCAAATGATAAGTTAGATTCGCCGTGGCATAAGGCTCTGCGCCTAGAATTCAGTTTCAAAGAACATGTAGCCAAATATGGGGAAGGTGAGATACCTGTGAAGGAGGTGATTCAAAAGCTAATGAAGGACAAAGTTAAAGCTGACAAAAGCTCACTACCTCGTATTTGCTCACCTGATTGGGAATTCAATCTGAGCTCCATTTTTGTTGAAGTAGAAACACCACTGGGTCTATATGGCACCAGGAGTAGTGCTGCATTAACCGTAAGATCAAGAGGGGAAGCAAACTTTTATGAGGTTTATCTGGATGACACCAAGTGGAAGGAACATGCTATCGATTTCCATATCGGGAAGTTGAACTATAAAGCAGTCACGGATTAA
Predicted protein sequences of Glyma06g11020
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g11020.1 sequence type=predicted peptide gene model=Glyma06g11020 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MCIALFLWQCHPLPTKPVSWWEDCDILAGRDEIAMGTWLACSTQGRVAFLTNVLELHTLPEAKSRGDLPVLFLKSSKKPKEFAESLKLEAHYYNGFNIVVADIVSKSMVYISNRPKGQPITIKEVPPGLHVLSNDKLDSPWHKALRLEFSFKEHVAKYGEGEIPVKEVIQKLMKDKVKADKSSLPRICSPDWEFNLSSIFVEVETPLGLYGTRSSAALTVRSRGEANFYEVYLDDTKWKEHAIDFHIGKLNYKAVTD*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
