Glyma06g11000 - SoyBase

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Report for Sequence Feature Glyma06g11000

Feature Type:	gene_model
Chromosome:	Gm06
Start:	8377871
stop:	8378650
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g11000

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G27080	AT	Annotation by Michelle Graham. TAIR10: Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family \| chr2:11566383-11567165 FORWARD LENGTH=260	SoyBase	E_val: 2.00E-37	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009506	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF03168	PFAM	Late embryogenesis abundant protein	JGI		ISS
UniRef100_I1KA08	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1KA08_SOYBN	SoyBase	E_val: 1.00E-180	ISS
UniRef100_Q84VP8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Late embryogenesis abundant hydroxyproline-rich glycoprotein n=1 Tax=Arabidopsis thaliana RepID=Q84VP8_ARATH	SoyBase	E_val: 3.00E-28	ISS

Expression Patterns of Glyma06g11000

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g11000

Paralog	Evidence	Comments
Glyma04g11260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g11000 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g104900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g11000

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g11000

Limit To All Plant Sequences

>Glyma06g11000.1   sequence type=CDS   gene model=Glyma06g11000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAGCGGGTGTCTTCGTCATCGCTACCGTCGCCATCACCCCCACCTCTTGAAAAGAACCATAATACCGACAAACTCAAGTTACCAGACTTAGACCCTGGCACCTACGTTGTCCAGGTCCCCAAGGACCAAGTCTACCGTGTTCCGCCGCCGGAAAACGCCCAAATCGCCGAGAGCCATAAGAAATCTCCTCCCAACAAGGAAGCAAAAACGTCACGCTGCTGCTTGTGTTGCGTGTTGTTCTTCATTATATTCTTGGTCCTTGCAATTCTTCTCGGAGCCGTTCTAGGTGGTCTTTTTTCCATGTTACTCACACCAGAGGACCCTAAGTTTTCCATCACAAGCTTTAAGGTCGTGGAGACCAAGCCACACCCCAAATACGACGTCACTTTGGAAGTCCACAATCCAAATTCCGACGTGGGAATTTTGTATAATGGCAAAGGCCATGTCTCCCTCTCTCTAAGGCGACAAGAGAATATTGCTTCAGGAGCATACCCTACTTTCCGTCAAGACTCTCACGATACGACAACGTTTGGGCTAACTTTAACATCATCCTCAAAAGCCGGTCTCCCTAAGGAGGTGGAGGAAAGCGTCAGGAACGATAAGAAGAAAGTGAGTGTGACATTCTCGTTGGCCATTCACGCCCTAGCACACATGAAAATGGGCTTGTTGCGTAGTGGGACAATGAAATTCGATGTTACGTGCAAAGTGAAGTTGGATACGTTGGCCAAAACCACTCACGTACTCTCTCAACAATGCGAAACTAAACGACACTAG

Predicted protein sequences of Glyma06g11000

Limit To All Plant Sequences

>Glyma06g11000.1   sequence type=predicted peptide   gene model=Glyma06g11000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEERVSSSSLPSPSPPPLEKNHNTDKLKLPDLDPGTYVVQVPKDQVYRVPPPENAQIAESHKKSPPNKEAKTSRCCLCCVLFFIIFLVLAILLGAVLGGLFSMLLTPEDPKFSITSFKVVETKPHPKYDVTLEVHNPNSDVGILYNGKGHVSLSLRRQENIASGAYPTFRQDSHDTTTFGLTLTSSSKAGLPKEVEESVRNDKKKVSVTFSLAIHALAHMKMGLLRSGTMKFDVTCKVKLDTLAKTTHVLSQQCETKRH*

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