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Report for Sequence Feature Glyma06g10970

Feature Type:gene_model
Chromosome:Gm06
Start:8329933
stop:8334057
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g10970
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G78120AT Annotation by Michelle Graham. TAIR10: Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:29394021-29396003 REVERSE LENGTH=530 SoyBaseE_val: 9.00E-139ISS
GO:0010089GO-bp Annotation by Michelle Graham. GO Biological Process: xylem development SoyBaseN/AISS
GO:0044036GO-bp Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
KOG0550 KOG Molecular chaperone (DnaJ superfamily) JGI ISS
PTHR22904Panther CHAPERONE BINDING PROTEIN JGI ISS
PF00085PFAM Thioredoxin JGI ISS
PF00515PFAM Tetratricopeptide repeat JGI ISS
UniRef100_G7KAB8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Small glutamine-rich tetratricopeptide repeat-containing protein n=1 Tax=Medicago truncatula RepID=G7KAB8_MEDTR SoyBaseE_val: 0ISS
UniRef100_UPI000233A8F4UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A8F4 related cluster n=1 Tax=unknown RepID=UPI000233A8F4 SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g10970
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g10970
ParalogEvidenceComments
Glyma04g11230 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g10970 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g104600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g10970
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g10970
>Glyma06g10970.2   sequence type=CDS   gene model=Glyma06g10970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGAGAAAACCAAGAACAAGGTGGAGGTTCAATTGGGTTGCGGTTTGATGGGAAGAATTTTCCATCTCAAAACCAATAACAGGACTAGAAAATCCTCTGTTCATTCACTACCCGTGAAGGTTTGCAACAACACTGCACAGCAACAGAGGGATCAGGCCAAAAACGAAGCCAAACCCTCTCCAAACCATGAATCAAATGTTCCAAGAGATAGCTCCATTGGAACCATTCCTACACTGAAAGTGGAGCAGAATCCAGCGAGAAAGAGTAGCTCTAGTCACCGTGCACCTTCAGCATACCAAAACACTCAAAACGGGAGAGCCTCGGACGCTGCAAGAACCTCAATTCAACGAAGCCACGACTCAAATGAAGAGAGTAAACAACAACAGAAAGAGCACGCTGTTGTTAACTCTCTGGAACTTGCTAGGATAAGTACAAGTGCTAATCATCATCATCATCAAAACAACGAGACGAAATCCCTGGCGAAAGAATTTGTGTTACCAATCACTGGGAATTTGCTTGTGAATAGCAGCCCAAGAACTAGTATTACCAAGAGCAAAGAGTTGAACACCTTGTCCGGCTCCTGTTCTTACAACAGTAATAATAGTACTAACAAAGGCATGATGGGGAACATAATGAGGAAGAACAGCGACGAGCTTGCGCAATTTCGGAGTCCGAGGAACGGCAGAGTGGACCCTGAGGTGTTGAAGTCCATGGGGAATGAAGCGTACAAACAGGGGAGATTTGAAGAGGCTTTGACTTTGTATGACCGAGCCATTGCTGTTGACTCAAAGAAAGCAACGTATCATTGCAATAAGAGCGCGGCTTTGATAGGTTTGGGAAGGTTTCTTCAGGCAATTGTTGAGTGTGAGGAAGCTATCAAGTTGGAGCCTTCGTATGGCAGAGCCCACACGCGTTTGGCAACAATTTATTTCAGATTGGGAGAGGCAGAGAAGGCACTGAATTGCAATGAAACAAGCTCATGTGTTGATTCGGTACTCGCTTTCCAAGCTCAGGCTCTTCAAAATCACCTTAGCAAATGCACTGAAGCTCGGAAAGTCAAAGATTGGAAAGTTATATTAAATGAAACACAGGCTGCAATATCCTTGGGTGCTGATTCAGCTCCACTGGTCTATTCTTTACATACTGAAGCCCTGCTGAAGCTCCTAAGACATCAAGAGGCACACGCTACCTACGAGAAAATGCCAAAATTTGACCTTGATTCTTCTAACAAATTATTTGGCCCCGTTCGTAGTGCTTACCTATTGATGACAGGCGCGCAAATTTACTTGGCAGCCGGCAGGTTTGAGGATGCTGTAACAGCATCTGAGCAAGCAGCTAAACTAGATCCAAGTAATTTTGAGATGAATGCAGTGGTGAGGAGGGCCAGAGCAGTGACATCAGCCAGAATGAGTGGTAACTTACTCTTCAAGGCATCAAAATTCACGGAAGCATATGCTGTATACAATGAAGGACTAGAGCATGATCCACACAACTCAGTTCTGCTATGCAATAGAGCAGCGTGTCGTTCTAAGCTAGGTCAATTCGAGAAAGCAATTGAAGATTGTAACGTAGCACTTATAATTCAACCTAGTTATAGCAAGGCTAGGTTGCGGAGGGCAGATTGCAATGCCAAGTTGGAACGATGGGAAGCTGCCATTCAAGACTATGAAATGCTATTAAGAGAAAAGCCAGGGGATGAGGAGGTGGCAAGGGCTCTGTTTGAGACCCAGCTCCAACTCAAGATGCTACGCGGTGAAGATATTAAGGACTTGAAATTTGGCTCAAATTTGTTTTTCATCTCAAGCAATGATCGGTTTAGACATTATGTAACATCACCTGGGATGTCTGTGGTACTCTTTTGTAACAAGGCAACCCATAAGCAAGTGTTGTTGGTGTTGGAGCAAACCTGCAAGAGATTTCCATCAGTTAATTTCCTTAAGGTGGAGATTGAAGACCATCCATACTTGGCAAAATCAGAAGGTGTGAACTGCATCCCAGCCTTTAAAATATACAAGAATGGATCAAGGATTAAAGAAATTCCAGGAAACAACCACGATTTGTTGGAAAAATTAGTTAAATTATATAGCAGCTGA
Predicted protein sequences of Glyma06g10970
>Glyma06g10970.2   sequence type=predicted peptide   gene model=Glyma06g10970   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEKTKNKVEVQLGCGLMGRIFHLKTNNRTRKSSVHSLPVKVCNNTAQQQRDQAKNEAKPSPNHESNVPRDSSIGTIPTLKVEQNPARKSSSSHRAPSAYQNTQNGRASDAARTSIQRSHDSNEESKQQQKEHAVVNSLELARISTSANHHHHQNNETKSLAKEFVLPITGNLLVNSSPRTSITKSKELNTLSGSCSYNSNNSTNKGMMGNIMRKNSDELAQFRSPRNGRVDPEVLKSMGNEAYKQGRFEEALTLYDRAIAVDSKKATYHCNKSAALIGLGRFLQAIVECEEAIKLEPSYGRAHTRLATIYFRLGEAEKALNCNETSSCVDSVLAFQAQALQNHLSKCTEARKVKDWKVILNETQAAISLGADSAPLVYSLHTEALLKLLRHQEAHATYEKMPKFDLDSSNKLFGPVRSAYLLMTGAQIYLAAGRFEDAVTASEQAAKLDPSNFEMNAVVRRARAVTSARMSGNLLFKASKFTEAYAVYNEGLEHDPHNSVLLCNRAACRSKLGQFEKAIEDCNVALIIQPSYSKARLRRADCNAKLERWEAAIQDYEMLLREKPGDEEVARALFETQLQLKMLRGEDIKDLKFGSNLFFISSNDRFRHYVTSPGMSVVLFCNKATHKQVLLVLEQTCKRFPSVNFLKVEIEDHPYLAKSEGVNCIPAFKIYKNGSRIKEIPGNNHDLLEKLVKLYSS*






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