Glyma06g10960 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g10960

Feature Type:	gene_model
Chromosome:	Gm06
Start:	8308855
stop:	8309902
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g10960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G35830	AT	Annotation by Michelle Graham. TAIR10: VQ motif-containing protein \| chr1:13321214-13322122 REVERSE LENGTH=302	SoyBase	E_val: 4.00E-13	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05678	PFAM	VQ motif	JGI		ISS
UniRef100_I1KA02	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KA02_SOYBN	SoyBase	E_val: 8.00E-150	ISS

Proteins Associated with Glyma06g10960

Locus	Gene Symbol	Protein Name
	VQ23	VQ motif containing protein gene 23

Expression Patterns of Glyma06g10960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g10960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g104500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g10960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g10960

Limit To All Plant Sequences

>Glyma06g10960.2   sequence type=CDS   gene model=Glyma06g10960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCTATCAACAGTGGAAGCATCTCTTCTAGCGATGATGAATACGATTCATCATCACACGCTGATCCACCGTTCCACAATCATTTCGGTTCCATCTCTCACCCGCAACAACCACCCCTGACTCTCGAGGCCAAAGATCTGAACCCAATTGCACCCTCCCAGAAAGCCTACCATCTTCGACATCAGCAACACCAACAACAACGAATCAATTGCCTGTTGGGTCACGACAACATTCATGATACTTCACGACAACAAGTCCCATCATCTCCACAAACCAACAAACCTCGTACGCGAATTCAAGGAAACGAAAGCAGAGCTTCAAGGCGTGCACCCACCACCGTTCTCACCACCGACACCAACAACTTCAGATCCATGGTTCAAGAGTTCACCGGAATCTCTGCACCTCCCTTTTCATCTTCCTTCTCTCGACGCATCCCTCTTCGCCCAAACCCTTTGCTTTCAACAACTTCATCGAGGACCAGCTTGTTACACAACAACAACAATATCAATGTTTCTCCTAATAATAACTACCAACTACTTCCTGATCTATCTTTACCCTATCAACCCCCACCACAGAATCTCATACAAGATATTCACTCCATTCCCTCATTCCACCCTTCTCCTTCTCTTCACTCTCTTGTCCCTGCAGGGCTTGCTGCAAAGTCTTTATCCACCATGCCCACACTTGATGCGCATGATCTGCTGGGTGCTCATGAACATGTTTCTGAGGGCATGTTTCTGAGGAGTGACGGTGATGCAGGAGGGAGAAAAGATCCGTTTAGGTGCTTAGATCTTGGGAATAATAATAGTTATGGTGGCTGCAAGCTCAATATGTCGGTTTCTGCGTCGAGCAGCTTGAACCATGAGAAGAACTTGGAGAATGTTGGTAATGGAAATTCCCCTAGGGAAGGTGCCGTGGAGGCGTGGATTTGTTCCTCTGAGCAATAG

Predicted protein sequences of Glyma06g10960

Limit To All Plant Sequences

>Glyma06g10960.2   sequence type=predicted peptide   gene model=Glyma06g10960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSINSGSISSSDDEYDSSSHADPPFHNHFGSISHPQQPPLTLEAKDLNPIAPSQKAYHLRHQQHQQQRINCLLGHDNIHDTSRQQVPSSPQTNKPRTRIQGNESRASRRAPTTVLTTDTNNFRSMVQEFTGISAPPFSSSFSRRIPLRPNPLLSTTSSRTSLLHNNNNINVSPNNNYQLLPDLSLPYQPPPQNLIQDIHSIPSFHPSPSLHSLVPAGLAAKSLSTMPTLDAHDLLGAHEHVSEGMFLRSDGDAGGRKDPFRCLDLGNNNSYGGCKLNMSVSASSSLNHEKNLENVGNGNSPREGAVEAWICSSEQ*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain