Glyma06g10951 - SoyBase

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Report for Sequence Feature Glyma06g10951

Feature Type:	gene_model
Chromosome:	Gm06
Start:	8303660
stop:	8305506
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g10951

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G39720	AT	Annotation by Michelle Graham. TAIR10: VQ motif-containing protein \| chr4:18429992-18430864 REVERSE LENGTH=290	SoyBase	E_val: 5.00E-12	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010089	GO-bp	Annotation by Michelle Graham. GO Biological Process: xylem development	SoyBase	N/A	ISS
GO:0044036	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PF05678	PFAM	VQ motif	JGI		ISS
UniRef100_I1KA02	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1KA02_SOYBN	SoyBase	E_val: 4.00E-115	ISS

Proteins Associated with Glyma06g10951

Locus	Gene Symbol	Protein Name
	VQ22	VQ motif containing protein gene 22

Expression Patterns of Glyma06g10951

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g10951 not represented in the dataset	Glyma06g10951 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g10951

Paralog	Evidence	Comments
Glyma04g11211	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g10951 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g104400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g10951

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g10951

Limit To All Plant Sequences

>Glyma06g10951.1   sequence type=CDS   gene model=Glyma06g10951   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTCTGGTAACAGTGGAAGCATCTCTTCTAGCGATGATGAATATGATTCATCCCACGCCGATCCATCGTTCCTCAATCATTTCGGTTCCATCTCTCACCCGCAACAACCATCTCTTGTTCCTTCTCATCCCTCAATGTTTGATCTTTCCTCAAGCTACTTCCACGCTGTCGTCTCACAATCCCACCAAAACCCACATAATCACTTGTTTAACTTAGACTGTCAAGACCAAAGATCTGAACCCAATCGCACCCTCCCAGAAAGCCTACCATCTTCGACATCAGCAACACCAACAACAACAAATCAATGCCTGTTGGGTCACGACAACATTAATGATAATTCAATACAACAACTCCCATCATCTCCACAAACCAACAACCTCGTACGCAACTCAAAGAAACGAAGCAGATCTTCAAGGCGTGCACCCACCACCGACACCAACAACTTCAGATCCATGGTTCAAGAGTTCACCGGAATCCCTGCACCTCCCTTTTCATCTTCCTTCTCTCGACGCATCCCTCTTTGCCCAAACCCTTTGCTTTCAACAACTTCATCGAGGACCAGCTTGTTACACAACAAAAACAATATCAATGTTTCTCCTAATAATAACTACCAACTACTTCCTGATCTATCTTTACCCTATCAACCCCCACCACAGAATCTCATACAAGATATTCACTCCATTCCCTTATTCCACCCTTCTCCTTCTCTTCACTCTCTTGTCCCTTCAGGGCTTGCTGCAAAGTCTTTATCCACCATGCCCACACTTGATGCGCATGATCTGCTGGGTGCTCATGAGCATGTTGTTTCTGAGGGCATGTTTCTGAGGAGTGACGGTGATGCAGGAGGGATAAGAGACCCGTTTTGGTGCTTAGATCATGGGAATAATAGTAATTATGGTGGCTGCAAGCTCAACATGTCGGTTTCTGCGTCGAGCAGCTTGAACCGTGAGAAGAACTTGGAGAATGTTGGTAATGCAAATGGAAATTCCCCTAGGGAAGGTACCGTGGAAGCGTGGATTTGA

Predicted protein sequences of Glyma06g10951

Limit To All Plant Sequences

>Glyma06g10951.1   sequence type=predicted peptide   gene model=Glyma06g10951   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSGNSGSISSSDDEYDSSHADPSFLNHFGSISHPQQPSLVPSHPSMFDLSSSYFHAVVSQSHQNPHNHLFNLDCQDQRSEPNRTLPESLPSSTSATPTTTNQCLLGHDNINDNSIQQLPSSPQTNNLVRNSKKRSRSSRRAPTTDTNNFRSMVQEFTGIPAPPFSSSFSRRIPLCPNPLLSTTSSRTSLLHNKNNINVSPNNNYQLLPDLSLPYQPPPQNLIQDIHSIPLFHPSPSLHSLVPSGLAAKSLSTMPTLDAHDLLGAHEHVVSEGMFLRSDGDAGGIRDPFWCLDHGNNSNYGGCKLNMSVSASSSLNREKNLENVGNANGNSPREGTVEAWI*

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