Report for Sequence Feature Glyma06g10940
Feature Type: gene_model
Chromosome: Gm06
Start: 8297096
stop: 8299358
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g10940
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G78140 AT
Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein | chr1:29401937-29403878 REVERSE LENGTH=355
SoyBase E_val: 2.00E-113 ISS
GO:0008152 GO-bp
Annotation by Michelle Graham. GO Biological Process: metabolic process
SoyBase N/A ISS
GO:0009507 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: chloroplast
SoyBase N/A ISS
GO:0010287 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plastoglobule
SoyBase N/A ISS
GO:0008168 GO-mf
Annotation by Michelle Graham. GO Molecular Function: methyltransferase activity
SoyBase N/A ISS
PTHR10108 Panther
METHYLTRANSFERASE
JGI ISS
PTHR10108:SF157 Panther
METHYLTRANSFERASE-RELATED
JGI ISS
PF08241 PFAM
Methyltransferase domain
JGI ISS
UniRef100_B9RJI9 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: S-adenosylmethionine-dependent methyltransferase, putative n=1 Tax=Ricinus communis RepID=B9RJI9_RICCO
SoyBase E_val: 2.00E-111 ISS
UniRef100_I1KA00 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1KA00_SOYBN
SoyBase E_val: 2.00E-152 ISS
Expression Patterns of Glyma06g10940
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g10940
Paralog Evidence Comments
Glyma04g11180 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g10940 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g104300 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g10940
Coding sequences of Glyma06g10940
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g10940.2 sequence type=CDS gene model=Glyma06g10940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
GTGCCATTGATATCATTTCTCCATGAGAGGGGCTGGCGTCAAACATTTTCTGTGTGGGGTGGTTTTCCAGGTCCTGAGAAAGAGTTTGAATTGATGAAGGGTTTCTTAAAGCCAGTATTGGGTGGAAATATCATTGATGCTAGTTGTGCAAGTGGATTATTTTCAAGATTATTTGCAAAAAGTGGACTGTTTTCTTTTGTTGTTGCTCTAGACTACTCAGAAAATATGTTGCAGCAATGTTATGAATTCATTCAAAAGGAAGAGAACTTTCCAAAAGAGAACTTCATCTTGGTTAGAGCAGACATATCTAGGCTCCCCTTTGTTTCCAGTTCTGTTGATGCTGTACATGCAGGTGCAGCTCTCCACTGTTGGCCTTCACCAATAGCAGTTGCTGAAATAAGTCGTGTTTTACGACCTGGAGGTGTATTTGTCGTAACCACTTACATGCTCGATGGGCCTTTTTCTGTTATCCCATTTTTAAGTACACTACGGCAGAATGCAAGGCAAGTGTCTGGGAGCTACATCTTTCTCTCTGAGCGTGAACTTGAAGATCACTGCAGGGCATGTGGGCTGGTTGGATTTAAATGCATTAGAAATGGGCTTTTTGAGATGATCTCTGCTACAAAGCCCAGTTAA
Predicted protein sequences of Glyma06g10940
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g10940.2 sequence type=predicted peptide gene model=Glyma06g10940 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
VPLISFLHERGWRQTFSVWGGFPGPEKEFELMKGFLKPVLGGNIIDASCASGLFSRLFAKSGLFSFVVALDYSENMLQQCYEFIQKEENFPKENFILVRADISRLPFVSSSVDAVHAGAALHCWPSPIAVAEISRVLRPGGVFVVTTYMLDGPFSVIPFLSTLRQNARQVSGSYIFLSERELEDHCRACGLVGFKCIRNGLFEMISATKPS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
