Glyma06g10930 - SoyBase

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Report for Sequence Feature Glyma06g10930

Feature Type:	gene_model
Chromosome:	Gm06
Start:	8287642
stop:	8290944
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g10930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G78150	AT	Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G35780.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). \| chr1:29404996-29406341 FORWARD LENGTH=274	SoyBase	E_val: 4.00E-126	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0010048	GO-bp	Annotation by Michelle Graham. GO Biological Process: vernalization response	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_C6TI18	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TI18_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_E4MY59	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-43-H20 n=1 Tax=Eutrema halophilum RepID=E4MY59_THEHA	SoyBase	E_val: 2.00E-134	ISS

Expression Patterns of Glyma06g10930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g10930

Paralog	Evidence	Comments
Glyma04g11160	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g10930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g104200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g10930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g10930

Limit To All Plant Sequences

>Glyma06g10930.5   sequence type=transcript   gene model=Glyma06g10930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAGAGGTGGTGTGGGGGTGCGTGGTTGGCGTATGCTTTGTTTTGAAACAGAAGAAGAGTAGCTTCTACTTTGTACTACTCTCTCTTCTTTCTACTTACTACTACCAGCATAACATTTTTCTTGTCCTTATATCCTTATATATAAATAAAATTAACTTTCTCTCCCGTGTTTTTGTTCTCTCTACCATTGAGCAAACAAAAAGAATCTTTGGGAGATCGGAGAGGTCATCGTCGTCATTTCTGCGCTCGAGATTAACATAAGGAACAACAGGGTATTGTAGCTGAACGATATGGAGAGAAGCACTCCGGTGAGGAAGCCACACACTTCAACTGCAGATCTGCTTACGTGGCCTGAAACACCAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAGCCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACGAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTTGTAGCCAATGGAGAAGATGATGCCTTAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTTTCTCCAAAAAAGCCCACTTCTTTGCCAGAGGTGGCCAAGCAGCGTGAGCTAAGTGGAACTTTGGAAAGTGAAGACTCTATATTGAAAAAGCAACTCTCTGATGCAAAGTGCAAGGAGCTTAGCGGTCATGACATATTTGCTCCGCCACCAGAAATCAAACCCAGGCCAATAACTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAGATCTATGACAAGAAATTTGCAGAACTTTCAGGGAATGACATATTCAAAGGGGATGCACCACCTTCATCTGCTGACAAATCGTTGAGCGGGGCCAAACTACGAGAGATGAGTGGCAGTAACATCTTTGCTGATGGGAAGGTAGAAGCTAGAGACTACCTAGGTGGTGTACGGAAGCCACCTGGTGGCGAGAGCAGCATTGCCTTGGTATAATTTATTAGGGTCTAACTCATCTTCATACCGTCTTGTTTTGTTTTAATTAATTTTTAGTGGGGTTGTGTTATTATATTATTTGACCTTGTATTCTGGGTTTTGGGAATTGGTGTTTTTAGGTTTCTTGATGTCTTGACCAAAAAGGACCATCTGCTAATTGGTTGTATGTCCATAATCCTGTGATTTCCTGTGTTTGCTTTTAATGAAGTGATTTGAACTGTTTACTTGATC

>Glyma06g10930.6   sequence type=transcript   gene model=Glyma06g10930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TAGAGAGTAAATAGTAATAATTAAAAGAAAAGAAAGAAAGATAACAAGGAAGGGGGGGTTATATAAGAAAGAGGTGGTGTGGGGGTGCGTGGTTGGCGTATGCTTTGTTTTGAAACAGAAGAAGAGTAGCTTCTACTTTGTACTACTCTCTCTTCTTTCTACTTACTACTACCAGCATAACATTTTTCTTGTCCTTATATCCTTATATATAAATAAAATTAACTTTCTCTCCCGTGTTTTTGTTCTCTCTACCATTGAGCAAACAAAAAGAATCTTTGGGAGATCGGAGAGGTCATCGTCGTCATTTCTGCGCTCGAGATTAACATAAGGAACAACAGTGAGCAGGGTATTGTAGCTGAACGATATGGAGAGAAGCACTCCGGTGAGGAAGCCACACACTTCAACTGCAGATCTGCTTACGTGGCCTGAAACACCAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAGCCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACGAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTTGTAGCCAATGGAGAAGATGATGCCTTAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTTTCTCCAAAAAAGCCCACTTCTTTGCCAGAGGTGGCCAAGCAGCGTGAGCTAAGTGGAACTTTGGAAAGTGAAGACTCTATATTGAAAAAGCAACTCTCTGATGCAAAGTGCAAGGAGCTTAGCGGTCATGACATATTTGCTCCGCCACCAGAAATCAAACCCAGGCCAATAACTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAGATCTATGACAAGAAATTTGCAGAACTTTCAGGGAATGACATATTCAAAGGGGATGCACCACCTTCATCTGCTGACAAATCGTTGAGCGGGGCCAAACTACGAGAGATGAGTGGCAGTAACATCTTTGCTGATGGGAAGGTAGAAGCTAGAGACTACCTAGGTGGTGTACGGAAGCCACCTGGTGGCGAGAGCAGCATTGCCTTGGTATAATTTATTAGGGTCTAACTCATCTTCATACCGTCTTGTTTTGTTTTAATTAATTTTTAGTGGGGTTGTGTTATTATATTATTTGACCTTGTATTCTGGGTTTTGGGAATTGGTGTTTTTAGGTTTCTTGATGTCTTGACCAAAAAGGACCATCTGCTAATTGGTTGTATGTCCATAATCCTGTGATTTCCTGTGTTTGCTTTTAATGAAGTGATTTGAACTGTTTACTTGATCATGTGTTTCAATTTTCAATAGTCGCTTTAAAGTCTACATTGACTTGCATTCATATTTGCTTTTTTTTTTGGATGGATA

>Glyma06g10930.7   sequence type=transcript   gene model=Glyma06g10930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GAAAGAGGTGGTGTGGGGGTGCGTGGTTGGCGTATGCTTTGTTTTGAAACAGAAGAAGAGTAGCTTCTACTTTGTACTACTCTCTCTTCTTTCTACTTACTACTACCAGCATAACATTTTTCTTGTCCTTATATCCTTATATATAAATAAAATTAACTTTCTCTCCCGTGTTTTTGTTCTCTCTACCATTGAGCAAACAAAAAGAATCTTTGGGAGATCGGAGAGGTCATCGTCGTCATTTCTGCGCTCGAGATTAACATAAGGAACAACAGGCACGGTCCCCCCCCCCCCTCCATTTTATTTTTCTTGTCATTTTTTGTATATTTATTGAAAGAAGGGACGAGCCCAAAGTGAAGAATGAGTAATAAGGGTTAATTGGTTGAGCAGTGAGCAGGGTATTGTAGCTGAACGATATGGAGAGAAGCACTCCGGTGAGGAAGCCACACACTTCAACTGCAGATCTGCTTACGTGGCCTGAAACACCAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAGCCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACGAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTTGTAGCCAATGGAGAAGATGATGCCTTAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTTTCTCCAAAAAAGCCCACTTCTTTGCCAGAGGTGGCCAAGCAGCGTGAGCTAAGTGGAACTTTGGAAAGTGAAGACTCTATATTGAAAAAGCAACTCTCTGATGCAAAGTGCAAGGAGCTTAGCGGTCATGACATATTTGCTCCGCCACCAGAAATCAAACCCAGGCCAATAACTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAGATCTATGACAAGAAATTTGCAGAACTTTCAGGGAATGACATATTCAAAGGGGATGCACCACCTTCATCTGCTGACAAATCGTTGAGCGGGGCCAAACTACGAGAGATGAGTGGCAGTAACATCTTTGCTGATGGGAAGGTAGAAGCTAGAGACTACCTAGGTGGTGTACGGAAGCCACCTGGTGGCGAGAGCAGCATTGCCTTGGTATAATTTATTAGGGTCTAACTCATCTTCATACCGTCTTGTTTTGTTTTAATTAATTTTTAGTGGGGTTGTGTTATTATATTATTTGACCTTGTATTCTGGGTTTTGGGAATTGGTGTTTTTAGGTTTCTTGATGTCTTGACCAAAAAGGACCATCTGCTAATTGGTTGTATGTCCATAATCCTGTGATTTCCTGTGTTTGCTTTTAATGAAGTGATTTGAACTGTTTACTTGATC

Coding sequences of Glyma06g10930

Limit To All Plant Sequences

>Glyma06g10930.2   sequence type=CDS   gene model=Glyma06g10930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGGAGATAACTGGTAGTGGAATATTTGTAGCCAATGGAGAAGATGATGCCTTAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTTTCTCCAAAAAAGCCCACTTCTTTGCCAGAGGTGGCCAAGCAGCGTGAGCTAAGTGGAACTTTGGAAAGTGAAGACTCTATATTGAAAAAGCAACTCTCTGATGCAAAGTGCAAGGAGCTTAGCGGTCATGACATATTTGCTCCGCCACCAGAAATCAAACCCAGGCCAATAACTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAGATCTATGACAAGAAATTTGCAGAACTTTCAGGGAATGACATATTCAAAGGGGATGCACCACCTTCATCTGCTGACAAATCGTTGAGCGGGGCCAAACTACGAGAGATGAGTGGCAGTAACATCTTTGCTGATGGGAAGGTAGAAGCTAGAGACTACCTAGGTGGTGTACGGAAGCCACCTGGTGGCGAGAGCAGCATTGCCTTGGTATAA

>Glyma06g10930.5   sequence type=CDS   gene model=Glyma06g10930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGAAGCACTCCGGTGAGGAAGCCACACACTTCAACTGCAGATCTGCTTACGTGGCCTGAAACACCAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAGCCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACGAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTTGTAGCCAATGGAGAAGATGATGCCTTAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTTTCTCCAAAAAAGCCCACTTCTTTGCCAGAGGTGGCCAAGCAGCGTGAGCTAAGTGGAACTTTGGAAAGTGAAGACTCTATATTGAAAAAGCAACTCTCTGATGCAAAGTGCAAGGAGCTTAGCGGTCATGACATATTTGCTCCGCCACCAGAAATCAAACCCAGGCCAATAACTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAGATCTATGACAAGAAATTTGCAGAACTTTCAGGGAATGACATATTCAAAGGGGATGCACCACCTTCATCTGCTGACAAATCGTTGAGCGGGGCCAAACTACGAGAGATGAGTGGCAGTAACATCTTTGCTGATGGGAAGGTAGAAGCTAGAGACTACCTAGGTGGTGTACGGAAGCCACCTGGTGGCGAGAGCAGCATTGCCTTGGTATAA

>Glyma06g10930.6   sequence type=CDS   gene model=Glyma06g10930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGAAGCACTCCGGTGAGGAAGCCACACACTTCAACTGCAGATCTGCTTACGTGGCCTGAAACACCAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAGCCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACGAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTTGTAGCCAATGGAGAAGATGATGCCTTAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTTTCTCCAAAAAAGCCCACTTCTTTGCCAGAGGTGGCCAAGCAGCGTGAGCTAAGTGGAACTTTGGAAAGTGAAGACTCTATATTGAAAAAGCAACTCTCTGATGCAAAGTGCAAGGAGCTTAGCGGTCATGACATATTTGCTCCGCCACCAGAAATCAAACCCAGGCCAATAACTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAGATCTATGACAAGAAATTTGCAGAACTTTCAGGGAATGACATATTCAAAGGGGATGCACCACCTTCATCTGCTGACAAATCGTTGAGCGGGGCCAAACTACGAGAGATGAGTGGCAGTAACATCTTTGCTGATGGGAAGGTAGAAGCTAGAGACTACCTAGGTGGTGTACGGAAGCCACCTGGTGGCGAGAGCAGCATTGCCTTGGTATAA

>Glyma06g10930.7   sequence type=CDS   gene model=Glyma06g10930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGAGAAGCACTCCGGTGAGGAAGCCACACACTTCAACTGCAGATCTGCTTACGTGGCCTGAAACACCAATTTCTCATTCCCCAACTCATCCTTCCTCCGCCGTTCGTTCTCACCAGCCGTCGGATGGGATCAGGAAGGTGGTATTTGGGGGTCAGGTCACCGATGAAGAGGTCGAGAGCTTAAATAAACGAAAGCCTTGTTCGGATTATAAGATGAAGGAGATAACTGGTAGTGGAATATTTGTAGCCAATGGAGAAGATGATGCCTTAGAAGATGGCAGTGCCAACCCAAATAAGACTGGAGTACGTATGTATCAGCAAGCGATTTCTGGAATCAGCCATATCTCATTTGGTGAGGAGGAGAATGTTTCTCCAAAAAAGCCCACTTCTTTGCCAGAGGTGGCCAAGCAGCGTGAGCTAAGTGGAACTTTGGAAAGTGAAGACTCTATATTGAAAAAGCAACTCTCTGATGCAAAGTGCAAGGAGCTTAGCGGTCATGACATATTTGCTCCGCCACCAGAAATCAAACCCAGGCCAATAACTCCTCGCATACTGGAGTTGAAAGGAAGCATAGACATTGGAGAACGTCATGCTGATGGAGATCAAGGCGATACCAACTCTGCTGGGAAGACAGCAAAGAAGATCTATGACAAGAAATTTGCAGAACTTTCAGGGAATGACATATTCAAAGGGGATGCACCACCTTCATCTGCTGACAAATCGTTGAGCGGGGCCAAACTACGAGAGATGAGTGGCAGTAACATCTTTGCTGATGGGAAGGTAGAAGCTAGAGACTACCTAGGTGGTGTACGGAAGCCACCTGGTGGCGAGAGCAGCATTGCCTTGGTATAA

Predicted protein sequences of Glyma06g10930

Limit To All Plant Sequences

>Glyma06g10930.2   sequence type=predicted peptide   gene model=Glyma06g10930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKEITGSGIFVANGEDDALEDGSANPNKTGVRMYQQAISGISHISFGEEENVSPKKPTSLPEVAKQRELSGTLESEDSILKKQLSDAKCKELSGHDIFAPPPEIKPRPITPRILELKGSIDIGERHADGDQGDTNSAGKTAKKIYDKKFAELSGNDIFKGDAPPSSADKSLSGAKLREMSGSNIFADGKVEARDYLGGVRKPPGGESSIALV*

>Glyma06g10930.5   sequence type=predicted peptide   gene model=Glyma06g10930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERSTPVRKPHTSTADLLTWPETPISHSPTHPSSAVRSHQPSDGIRKVVFGGQVTDEEVESLNKRKPCSDYKMKEITGSGIFVANGEDDALEDGSANPNKTGVRMYQQAISGISHISFGEEENVSPKKPTSLPEVAKQRELSGTLESEDSILKKQLSDAKCKELSGHDIFAPPPEIKPRPITPRILELKGSIDIGERHADGDQGDTNSAGKTAKKIYDKKFAELSGNDIFKGDAPPSSADKSLSGAKLREMSGSNIFADGKVEARDYLGGVRKPPGGESSIALV*

>Glyma06g10930.6   sequence type=predicted peptide   gene model=Glyma06g10930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERSTPVRKPHTSTADLLTWPETPISHSPTHPSSAVRSHQPSDGIRKVVFGGQVTDEEVESLNKRKPCSDYKMKEITGSGIFVANGEDDALEDGSANPNKTGVRMYQQAISGISHISFGEEENVSPKKPTSLPEVAKQRELSGTLESEDSILKKQLSDAKCKELSGHDIFAPPPEIKPRPITPRILELKGSIDIGERHADGDQGDTNSAGKTAKKIYDKKFAELSGNDIFKGDAPPSSADKSLSGAKLREMSGSNIFADGKVEARDYLGGVRKPPGGESSIALV*

>Glyma06g10930.7   sequence type=predicted peptide   gene model=Glyma06g10930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MERSTPVRKPHTSTADLLTWPETPISHSPTHPSSAVRSHQPSDGIRKVVFGGQVTDEEVESLNKRKPCSDYKMKEITGSGIFVANGEDDALEDGSANPNKTGVRMYQQAISGISHISFGEEENVSPKKPTSLPEVAKQRELSGTLESEDSILKKQLSDAKCKELSGHDIFAPPPEIKPRPITPRILELKGSIDIGERHADGDQGDTNSAGKTAKKIYDKKFAELSGNDIFKGDAPPSSADKSLSGAKLREMSGSNIFADGKVEARDYLGGVRKPPGGESSIALV*

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