Glyma06g10920 - SoyBase

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Report for Sequence Feature Glyma06g10920

Feature Type:	gene_model
Chromosome:	Gm06
Start:	8280616
stop:	8284203
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g10920

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G78160	AT	Annotation by Michelle Graham. TAIR10: pumilio 7 \| chr1:29407900-29410184 FORWARD LENGTH=650	SoyBase	E_val: 2.00E-142	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0003729	GO-mf	Annotation by Michelle Graham. GO Molecular Function: mRNA binding	SoyBase	N/A	ISS
PTHR12537	Panther	RNA BINDING PROTEIN PUMILIO-RELATED	JGI		ISS
PTHR12537:SF13	Panther	PUMILIO-RELATED	JGI		ISS
PF00806	PFAM	Pumilio-family RNA binding repeat	JGI		ISS
UniRef100_G7KAF0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Pumilio domain-containing protein n=1 Tax=Medicago truncatula RepID=G7KAF0_MEDTR	SoyBase	E_val: 2.00E-152	ISS
UniRef100_UPI000233A793	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A793 related cluster n=1 Tax=unknown RepID=UPI000233A793	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g10920

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g10920

Paralog	Evidence	Comments
Glyma04g11151	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g10920 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g104100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g10920

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g10920

Limit To All Plant Sequences

>Glyma06g10920.2   sequence type=CDS   gene model=Glyma06g10920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACTCCCCCATGACGGCCAGAATGCTGAAAATGTCAGACGACAACAACAAACGAAACGCAGAAACGAGGTTCGTTGGGATTGCCAATGCGCCCACAACACCATCACCATTCCTTCACCCTGACCACGTGGCCGTTGGGTCCCCCATCTCCAGGGTCCCTCTCTCTCCTTCTCCAGCACCACCACCACCACCACCTCCCTCTCCCAGATTCCGGTTGGACCCAGCAGACCCCATGTGGGCTCATGATTTCTCTCTCGCCAACGATTTCTCCAGAATCAACCTCTTCGATCATGCAACCCAAACCGATCATAACATGCCTTTCCAACCCTACGCTTCTTATTTCAATGAAACAGGACCCCTCCCATATCATCGTCATCATGTTAACAACACCCAAACCAACATGGGTTTGGACCCTTACGCTTCTTGTTTCAATGAAACAGGAACCTTCCGAACCCTCCCCTATCATCCCCATGTTAACAATGCGGGTTTATTCGATAAAGGTTACACTTTTCCCATCCCAGATGATCACGTGTATCATCACCTCGTCGATCAGAGGAGGAGGCAGCCACAGGGTACAAGTGATAATAACTACCAGATTCTCGGTGATCGTTACGCGGTGGCTTCACAGTCTCTCGGAGGAGGAGGAGGAAGAGTCAAAAGCCCCATTAGGTTTTCTCAGATAACGCCTCCGTATCAATATCCTCCCAATGCCAATATTACCCCATCACATTATTACGTTGCTGCAAAAGAAAAAGCTGAACTTTCCCCTTTTTTATCTCCTAGGAGAATCATCGGGGAAGACCCTGCTGCAGCGTTTAGGTGTGACAACAATGGTGTTTTCCTACAAGGGAGAGATGCAAAACACTACTTTGAGAATGAGTATGGTTCTTACAGAAGGAGTCCTCGTTATGATGATGATGCAATTCATGGTGTGGGTCGGAGTGTTGTTCGTAAGAACTTTTATTCTTCTGCTGCTGCTCCTTCTGGTCAAAGAAGTGGTGGTGATTTCTCATCAGTGCCCATGCTGCAGGATTTTTATTCTGTGCCTGACGCGCAGTGCTACATTTACAACATGGCAAAGGATCAAAATGGTTGTCGTTTTCTGCAGCGGATGGTGGCTGAGGGGACCTACCAAGATATTTGTATGGTGTTTGAGGGAATCATTGGGAATGTTGTTGAACTCATGATAGACTCTTTCGGGAATTATCTGGTGCAGAAGCTGCTCGATGTTTGCACCGATGATCAACGGCTGCAGATTGTGCTCATGCTGACCAATCACCCAGCCCAGCTCGTTAGAGTCTCTTTAAATACTCACGGAACACGCGTGGTGCAGAAGTTGATCGAGACCCTCACCTCCACTGAACAAGTTTCATTGGTGAAGTCTGCCATTCAACCGGGTTTTCTTGATCTTATTAAGGATCTGAATGGAAACCATCTCATTCAACGTTGCTTGCAATGCCTTAGCTGTCAAGATAATCAGTTTATTTTTGATGCTGCTGTGAAGTTTTGTGTTGAAATAGCTACTCATCAGCATGGATGTTTTGTATTGCAACGTTGCATTCACCACTCTGTAGGAAAGAATCGAGATAAGCTGGTCACAGAAATATGCAAACATGGACTTCTCCTGGCTCAGGATGCATTTGGAAATTATGTTGTTCAATATGTTATAGAGTCGGATACCGCAGCTGTCTCAGCCAAACTACTTAGTCAGTTCAAAGAGAACTTTGTAATGTTGTCTACACAGAAATTCAGCAGTCATGTGGTCGAAAAATGCCTTCAGCATATTGGAGACAGCAGATCAAGGATAGTTCGAGAATTGTTGTCTGTTCCTCGCTTTGAACAGTTGTTGCAAGATCAATATGCCAATTATGTCATTCAATCTGCTCTACTTTTTACAAAGGGGCCTCTGCATGCATCTTTGGCTGAAGCTGTTCGTCTTCACAAAACGTTGTGCACCAGTCCATATTGCAAGAGGATTTTTTCAGGAAACCTGCTTAAGAAGTGA

Predicted protein sequences of Glyma06g10920

Limit To All Plant Sequences

>Glyma06g10920.2   sequence type=predicted peptide   gene model=Glyma06g10920   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSPMTARMLKMSDDNNKRNAETRFVGIANAPTTPSPFLHPDHVAVGSPISRVPLSPSPAPPPPPPPSPRFRLDPADPMWAHDFSLANDFSRINLFDHATQTDHNMPFQPYASYFNETGPLPYHRHHVNNTQTNMGLDPYASCFNETGTFRTLPYHPHVNNAGLFDKGYTFPIPDDHVYHHLVDQRRRQPQGTSDNNYQILGDRYAVASQSLGGGGGRVKSPIRFSQITPPYQYPPNANITPSHYYVAAKEKAELSPFLSPRRIIGEDPAAAFRCDNNGVFLQGRDAKHYFENEYGSYRRSPRYDDDAIHGVGRSVVRKNFYSSAAAPSGQRSGGDFSSVPMLQDFYSVPDAQCYIYNMAKDQNGCRFLQRMVAEGTYQDICMVFEGIIGNVVELMIDSFGNYLVQKLLDVCTDDQRLQIVLMLTNHPAQLVRVSLNTHGTRVVQKLIETLTSTEQVSLVKSAIQPGFLDLIKDLNGNHLIQRCLQCLSCQDNQFIFDAAVKFCVEIATHQHGCFVLQRCIHHSVGKNRDKLVTEICKHGLLLAQDAFGNYVVQYVIESDTAAVSAKLLSQFKENFVMLSTQKFSSHVVEKCLQHIGDSRSRIVRELLSVPRFEQLLQDQYANYVIQSALLFTKGPLHASLAEAVRLHKTLCTSPYCKRIFSGNLLKK*

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