Report for Sequence Feature Glyma06g10880
Feature Type: gene_model
Chromosome: Gm06
Start: 8248312
stop: 8249883
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g10880
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G78170 AT
Annotation by Michelle Graham. TAIR10: unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G22250.1); Has 66 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:29414160-29414941 FORWARD LENGTH=221
SoyBase E_val: 9.00E-21 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_I1K9Z2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9Z2_SOYBN
SoyBase E_val: 3.00E-167 ISS
UniRef100_Q9LM21 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: F16L1.2 protein n=1 Tax=Arabidopsis thaliana RepID=Q9LM21_ARATH
SoyBase E_val: 4.00E-14 ISS
Expression Patterns of Glyma06g10880
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g10880
Paralog Evidence Comments
Glyma04g11090 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g10880 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g103700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g10880
Coding sequences of Glyma06g10880
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g10880.1 sequence type=CDS gene model=Glyma06g10880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGTCTCCTTTCACAAACCGCTTACCGAGAGTACTCCAAGGCCAGAAATCCATGCAGAATTCGAAGCATCATCGAAGAAGAGAAAGTGGGAAGAGCCATTTGCCGAAGATTTCTTCAAGGATCATCAAACAAGTATAGAGAAGAGGAAATCCGTCTTTGATATAGAGCCTCGCCCTGAGACCCCTTTTTCTTCAGATAAATGGCGTCAATACCTCACTATTCAGTCAGGGCAGATACAGTTGTGTAACACAAGAACAACAACAGAGAACCCCGGAAGAAGCCCCGAATTAGAACCACCTTCTTCTCATCATCATATGAGTTTAAACCTTGAGCTGAATTTGACGTGTGAATCACCGAGGAAGAAAGAAGAAGGCTATGGTTATGACATGAATGAGAAAAAGAGTTCTCGTTCTTCCCCTGGGGGTTTGAGAGAATTACGTGAGGATCTGTTTACTGATCAACCAAGCAAGTTTAATAAGAAAGATTCAGATGGTAAAATTCTTTCTCCTTCATGGTTGTCATTATCTGAAGATGATTATAAAGAGATGGTTGCAACAGTTTGCATGCGTTGCCACATGTTGGTAATGTTATGCAAGTCATCTCCTTCATGTCCTAACTGTAAATTCATGCACCCACCAGATCAGAACCCTTCAAAATTCTTGAAGAGAAGGTGCAGTCTCTTCTGCTAG
Predicted protein sequences of Glyma06g10880
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g10880.1 sequence type=predicted peptide gene model=Glyma06g10880 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MVSFHKPLTESTPRPEIHAEFEASSKKRKWEEPFAEDFFKDHQTSIEKRKSVFDIEPRPETPFSSDKWRQYLTIQSGQIQLCNTRTTTENPGRSPELEPPSSHHHMSLNLELNLTCESPRKKEEGYGYDMNEKKSSRSSPGGLRELREDLFTDQPSKFNKKDSDGKILSPSWLSLSEDDYKEMVATVCMRCHMLVMLCKSSPSCPNCKFMHPPDQNPSKFLKRRCSLFC*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
