Glyma06g10850 - SoyBase

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Report for Sequence Feature Glyma06g10850

Feature Type:	gene_model
Chromosome:	Gm06
Start:	8228034
stop:	8231789
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g10850

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G15160	AT	Annotation by Michelle Graham. TAIR10: MATE efflux family protein \| chr1:5215475-5217545 FORWARD LENGTH=487	SoyBase	E_val: 0	ISS
GO:0006855	GO-bp	Annotation by Michelle Graham. GO Biological Process: drug transmembrane transport	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005215	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transporter activity	SoyBase	N/A	ISS
GO:0015238	GO-mf	Annotation by Michelle Graham. GO Molecular Function: drug transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015297	GO-mf	Annotation by Michelle Graham. GO Molecular Function: antiporter activity	SoyBase	N/A	ISS
KOG1347	KOG	Uncharacterized membrane protein, predicted efflux pump	JGI		ISS
PTHR11206	Panther	MULTIDRUG RESISTANCE PUMP	JGI		ISS
PTHR11206:SF11	Panther	MULTI ANTIMICROBIAL EXTRUSION (MATE) FAMILY TRANSPORTER-RELATED	JGI		ISS
PF01554	PFAM	MatE	JGI		ISS
UniRef100_G7IC53	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein TRANSPARENT TESTA n=1 Tax=Medicago truncatula RepID=G7IC53_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K9Y9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K9Y9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g10850

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g10850

Paralog	Evidence	Comments
Glyma04g11060	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g10850 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g103400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g10850

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g10850

Limit To All Plant Sequences

>Glyma06g10850.1   sequence type=CDS   gene model=Glyma06g10850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACACAATTCCATTTTGTCCCTGCTATATATATAATGGAGAGGCAGCGCAGAAGTTCTTTCATACAGACTCAGATATTTTTTACATTACACTCTTTGTCTCGATTGGGTTGTTAGTAGTAATAAGAAAGAAAAGTATGGAAGAGAATCTATTAGTATTAGCAAAAGGAAGTGGGGAGGAGCAGAAAGTTGCATGGGAAGGTTTGGGTGAGGAAATGAAGAGGATGATTGACATAGCAGGGCCTATGGTGGTTGTGACCGCTTCCCAGCGTTTGTTGCAGGTTGTGTCCGTCATGATGGTTGGTCACCTCAACGATGACCTCTTTCTCTCCAGCGCCGCCTTAGCCATCTCTCTTACTGCTGTCACGGGTTTCAGTTTTCTTATGGGAATGGCTAGTGGACTGGAAACTATTTGTGGACAAGCTTATGGAGCTCAACAACATAAAAAAATTGGAGTGCAAACATACACTGCTATATTCGCTCTCACATTCGTTTGTCTTCCCTTCACTTTTCTTTGGATCAACATGGAAAAGATACTAGTTTTCATAGGTCAGGACCCTCTAATTGCAAAAGAAGCAGGAAAATTCATAATTTGGCTTATTCCAGCACTTTTTGCATATGCAATTCTACAACCATTAGTTAGATATTTTCAAATGCAAAGTTTGCTTCTTCCCATGCTTATGACATCTTGTGTCACTCTATGTGTCCACATACCCCTTTGTTGGGTTTTGGTGTTCAAGACTAGACTGAATAATGTTGGTGGAGCATTAGCAATGAGTATTTCAACATGGTCAAATGTGATTTTTCTTGGATTATACATGAGATACTCTCCTAGATGTGCAAAAACTCGTGCACCCATTTCTATGGAATTGTTCCAAGGACTTCGGGAGTTCTTTCGCTTTGCTATACCTTCTGCAGTGATGATTTGCCTTGAATGGTGGTCATTTGAGTTGATTATCTTGTTGTCTGGGCTGTTACTAAATCCACAACTTGAAACTTCTGTTTTATCCATTTGTCTTAACACCACTTCAATTCTCTATGCAATACCTTTTGGAATTGGTGCTGCAGCAAGCACAAGGATTTCAAATGAATTAGGAGCGGGGAATCCACATGGTGCCTGTGTTTCTGTGTTGGCTGCAATATCTTTTGCAATCATTGAGACAACTGTAGTTAGCGGAACCCTCTTTGCTTGTCGCCATGTTTTTGGTTATGTTTTTAGCAATGAGAAGGAAGTTGTAGATTATGTCACTGTCATGGCTCCTTTGGTTTGCATATCGGTTATACTTGACAACATACAAGGTGTTCTCGCAGGGGTTGCTAGAGGTTGTGGATGGCAACATATAGGGGTTTATGTCAATATAGGAGCATTTTACCTATGCGGGATTCCAATGGCTATCTTATTATCATTTTTTGCAAAAATGAGAGGAAAAGGACTTTGGATTGGTGTACAAGTTGGTTCTTTTGCTCAATGTGTTCTACTTTCTACCATAACAAGTTGCATAAATTGGGAACAACAGACAATCAAGGCAAGAAAGAGATTATTTGGTAGTGAATTTTCAGCAGACGATAGACTGATATGA

Predicted protein sequences of Glyma06g10850

Limit To All Plant Sequences

>Glyma06g10850.1   sequence type=predicted peptide   gene model=Glyma06g10850   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDTIPFCPCYIYNGEAAQKFFHTDSDIFYITLFVSIGLLVVIRKKSMEENLLVLAKGSGEEQKVAWEGLGEEMKRMIDIAGPMVVVTASQRLLQVVSVMMVGHLNDDLFLSSAALAISLTAVTGFSFLMGMASGLETICGQAYGAQQHKKIGVQTYTAIFALTFVCLPFTFLWINMEKILVFIGQDPLIAKEAGKFIIWLIPALFAYAILQPLVRYFQMQSLLLPMLMTSCVTLCVHIPLCWVLVFKTRLNNVGGALAMSISTWSNVIFLGLYMRYSPRCAKTRAPISMELFQGLREFFRFAIPSAVMICLEWWSFELIILLSGLLLNPQLETSVLSICLNTTSILYAIPFGIGAAASTRISNELGAGNPHGACVSVLAAISFAIIETTVVSGTLFACRHVFGYVFSNEKEVVDYVTVMAPLVCISVILDNIQGVLAGVARGCGWQHIGVYVNIGAFYLCGIPMAILLSFFAKMRGKGLWIGVQVGSFAQCVLLSTITSCINWEQQTIKARKRLFGSEFSADDRLI*

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