Glyma06g10820 - SoyBase

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Report for Sequence Feature Glyma06g10820

Feature Type:	gene_model
Chromosome:	Gm06
Start:	8187283
stop:	8191046
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g10820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G34750	AT	Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein \| chr1:12736386-12737727 REVERSE LENGTH=282	SoyBase	E_val: 2.00E-160	ISS
GO:0002237	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0031347	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of defense response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
KOG0698	KOG	Serine/threonine protein phosphatase	JGI		ISS
PTHR13832	Panther	PROTEIN PHOSPHATASE 2C	JGI		ISS
PTHR13832:SF149	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00481	PFAM	Protein phosphatase 2C	JGI		ISS
UniRef100_A2Q6E4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein phosphatase 2C-like n=2 Tax=Medicago truncatula RepID=A2Q6E4_MEDTR	SoyBase	E_val: 9.00E-170	ISS
UniRef100_I1K9Y2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9Y2_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g10820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g10820

Paralog	Evidence	Comments
Glyma04g11000	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g10820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g103100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g10820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g10820

Limit To All Plant Sequences

>Glyma06g10820.2   sequence type=transcript   gene model=Glyma06g10820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGTTTTTGTTGTGGGTACCCTTTTTCCTTGGCATAAGAGAAAATACTATAATTTTCTTTTCCCCTGTCTTGGCGAAGCTTAAGGTTCCCCAAACGGTTACATAATTATATCATAACACAGAAACATAAGCATCCTACGATTCCTTTCTGCCTCACACACAACACAACACAAGCTTCAAAATTATCACTTTGCTTTATGTTCTCCCTCTCTCATTTTTCTCACTTGCTTCTGTAATTTTAGCTTTTGCAAACTTCGAAGGGAAACAGCATGGACTATCCGAGTCCAAGTACAAGTTGAATCCTTTATCAATTTTGATTGGACTGGTTGTGATTCTGGACACAGGAAGTGGGTTTCTTTTCAAATTTGAGTTGAAGGTGTCAGCCAAGTGGTTTGTGCTGAAAATTAGTTGCAAATATTGAAGAAGCTGCTCAAACTTTTTTCTTTTCATTCATGGACAAGTTGTGCTGTTTTAAGGCTTCATACTCTCAGGACTATTCAATTTCTGTGTTGGTTGCTTTACAGCTTGTAGCAGCACGTTCTTCCTCCAGCACTGGTAAGGGGAAAAATCATGAAGGCTCAATAAAGTATGGTTTCAGCCTTGTAAAAGGGAAAGCTAATCACCCAATGGAGGATTATCATGTTGCTAAGTTTGCACAGATAAAGGATAATGAATTGGGTTTATTTGCTATTTATGATGGTCACTTGGGTGACCGTGTGCCTGCCTACTTACAGAAACATTTGTTTACCAACATTTTGAGGGAGGAGGAATTTTGGGAGGACCCCACTCTTTCTATCTCAAAAGCATATGAGAGTACAGATCAGGAAATTCTATCACACAGTTCTGATCTTGGGCGTGGTGGATCAACGGCTGTAACTGCTATATTGATTAACGGACGAAGGTTATGGATAGCTAATGTTGGAGACTCAAGAGCTGTTCTATCAAGAAAAGGTCAAGCTGTACAAATGACAACAGACCATGAGCCTAACAAGGAACGAGGTAGCATTGAGACCAGAGGTGGTTTTGTCTCTAACTTGCCAGGTGATGTGCCTAGAGTAAATGGACAACTTGCTGTTTCTCGTGCATTTGGAGACAGGAGTCTCAAGTCACATTTGCGATCAGACCCTGATGTACAGTATACTGACATAGATGTTGATACTGAGATTCTAATCCTTGCAAGTGATGGACTTTGGAAGGTAATGACTAATCAAGAGGCAGTGGATATTGCTAGAAGAACGAGAGACCCTCAGAAAGCAGCTAAGCAACTAACAGCTGAAGCATTAAAAAGAGATAGTAAAGATGATATATCTTGTGTTGTGGTTAAATTCAGATGATGGTATCTTTCAAACCATGAGCATGCTCGGGTGCAGTTTATAACAATAATATAAAGGTACATGTCTACGGAGCATGTCAACTTATGGTCTGGACCAAACAACTTATATTACATACTTGTTTGGGTTAGTCCTGACTGAATTTTTCTGAATAGGTAATTTTGCCAAAGAAAAAAGAAGGGTTTGTCAAGCTCTAAATTGTTTTTTTTTTATAGATTGTGGTTTGAGAATGTTGTTTCTGCAAAAGTGTGACTACTCAGAATCTGTTGTATATTGTCTTTTTATTGTTCATAAAAGACCAGCGGCTGTGTAAAAGACGAATATGCTTGTAGTTATTGATTGGGGTATAGTGAGTGCTAGGATGATTGGTCCTATCCATGGCTGTATACCACATTCTTTGATAGAAGTGGACCCTCTTTTCCTTTGTTCTGTTTTCCAAATGAGAGGAGGTTCCCTGTGACACAAGCTTTTGATACCATATATATTAGATTATTAGTGTTACATGCATTTTACACATATTTTCATAAAATGAACAAAAGCATCTTTGATTCTTA

Coding sequences of Glyma06g10820

Limit To All Plant Sequences

>Glyma06g10820.1   sequence type=CDS   gene model=Glyma06g10820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAAGTTGTGCTGTTTTAAGGCTTCATACTCTCAGCTTGTAGCAGCACGTTCTTCCTCCAGCACTGGTAAGGGGAAAAATCATGAAGGCTCAATAAAGTATGGTTTCAGCCTTGTAAAAGGGAAAGCTAATCACCCAATGGAGGATTATCATGTTGCTAAGTTTGCACAGATAAAGGATAATGAATTGGGTTTATTTGCTATTTATGATGGTCACTTGGGTGACCGTGTGCCTGCCTACTTACAGAAACATTTGTTTACCAACATTTTGAGGGAGGAGGAATTTTGGGAGGACCCCACTCTTTCTATCTCAAAAGCATATGAGAGTACAGATCAGGAAATTCTATCACACAGTTCTGATCTTGGGCGTGGTGGATCAACGGCTGTAACTGCTATATTGATTAACGGACGAAGGTTATGGATAGCTAATGTTGGAGACTCAAGAGCTGTTCTATCAAGAAAAGGTCAAGCTGTACAAATGACAACAGACCATGAGCCTAACAAGGAACGAGGTAGCATTGAGACCAGAGGTGGTTTTGTCTCTAACTTGCCAGGTGATGTGCCTAGAGTAAATGGACAACTTGCTGTTTCTCGTGCATTTGGAGACAGGAGTCTCAAGTCACATTTGCGATCAGACCCTGATGTACAGTATACTGACATAGATGTTGATACTGAGATTCTAATCCTTGCAAGTGATGGACTTTGGAAGGTAATGACTAATCAAGAGGCAGTGGATATTGCTAGAAGAACGAGAGACCCTCAGAAAGCAGCTAAGCAACTAACAGCTGAAGCATTAAAAAGAGATAGTAAAGATGATATATCTTGTGTTGTGGTTAAATTCAGATGA

>Glyma06g10820.2   sequence type=CDS   gene model=Glyma06g10820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAAGTTGTGCTGTTTTAAGGCTTCATACTCTCAGGACTATTCAATTTCTGTGTTGGTTGCTTTACAGCTTGTAGCAGCACGTTCTTCCTCCAGCACTGGTAAGGGGAAAAATCATGAAGGCTCAATAAAGTATGGTTTCAGCCTTGTAAAAGGGAAAGCTAATCACCCAATGGAGGATTATCATGTTGCTAAGTTTGCACAGATAAAGGATAATGAATTGGGTTTATTTGCTATTTATGATGGTCACTTGGGTGACCGTGTGCCTGCCTACTTACAGAAACATTTGTTTACCAACATTTTGAGGGAGGAGGAATTTTGGGAGGACCCCACTCTTTCTATCTCAAAAGCATATGAGAGTACAGATCAGGAAATTCTATCACACAGTTCTGATCTTGGGCGTGGTGGATCAACGGCTGTAACTGCTATATTGATTAACGGACGAAGGTTATGGATAGCTAATGTTGGAGACTCAAGAGCTGTTCTATCAAGAAAAGGTCAAGCTGTACAAATGACAACAGACCATGAGCCTAACAAGGAACGAGGTAGCATTGAGACCAGAGGTGGTTTTGTCTCTAACTTGCCAGGTGATGTGCCTAGAGTAAATGGACAACTTGCTGTTTCTCGTGCATTTGGAGACAGGAGTCTCAAGTCACATTTGCGATCAGACCCTGATGTACAGTATACTGACATAGATGTTGATACTGAGATTCTAATCCTTGCAAGTGATGGACTTTGGAAGGTAATGACTAATCAAGAGGCAGTGGATATTGCTAGAAGAACGAGAGACCCTCAGAAAGCAGCTAAGCAACTAACAGCTGAAGCATTAAAAAGAGATAGTAAAGATGATATATCTTGTGTTGTGGTTAAATTCAGATGA

Predicted protein sequences of Glyma06g10820

Limit To All Plant Sequences

>Glyma06g10820.1   sequence type=predicted peptide   gene model=Glyma06g10820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKLCCFKASYSQLVAARSSSSTGKGKNHEGSIKYGFSLVKGKANHPMEDYHVAKFAQIKDNELGLFAIYDGHLGDRVPAYLQKHLFTNILREEEFWEDPTLSISKAYESTDQEILSHSSDLGRGGSTAVTAILINGRRLWIANVGDSRAVLSRKGQAVQMTTDHEPNKERGSIETRGGFVSNLPGDVPRVNGQLAVSRAFGDRSLKSHLRSDPDVQYTDIDVDTEILILASDGLWKVMTNQEAVDIARRTRDPQKAAKQLTAEALKRDSKDDISCVVVKFR*

>Glyma06g10820.2   sequence type=predicted peptide   gene model=Glyma06g10820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKLCCFKASYSQDYSISVLVALQLVAARSSSSTGKGKNHEGSIKYGFSLVKGKANHPMEDYHVAKFAQIKDNELGLFAIYDGHLGDRVPAYLQKHLFTNILREEEFWEDPTLSISKAYESTDQEILSHSSDLGRGGSTAVTAILINGRRLWIANVGDSRAVLSRKGQAVQMTTDHEPNKERGSIETRGGFVSNLPGDVPRVNGQLAVSRAFGDRSLKSHLRSDPDVQYTDIDVDTEILILASDGLWKVMTNQEAVDIARRTRDPQKAAKQLTAEALKRDSKDDISCVVVKFR*

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