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Report for Sequence Feature Glyma06g10790

Feature Type:gene_model
Chromosome:Gm06
Start:8162553
stop:8166739
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g10790
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G34780AT Annotation by Michelle Graham. TAIR10: APR-like 4 | chr1:12748835-12750124 REVERSE LENGTH=310 SoyBaseE_val: 4.00E-98ISS
GO:0045454GO-bp Annotation by Michelle Graham. GO Biological Process: cell redox homeostasis SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
KOG2640 KOG Thioredoxin JGI ISS
PTHR18929Panther PROTEIN DISULFIDE ISOMERASE JGI ISS
PF00085PFAM Thioredoxin JGI ISS
UniRef100_C6T8H9UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T8H9_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9SA00UniRef Annotation by Michelle Graham. Most informative UniRef hit: 5'-adenylylsulfate reductase-like 4 n=1 Tax=Arabidopsis thaliana RepID=APRL4_ARATH SoyBaseE_val: 2.00E-95ISS

Expression Patterns of Glyma06g10790
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g10790 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g102800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g10790
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g10790
>Glyma06g10790.1   sequence type=CDS   gene model=Glyma06g10790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAGGATTTGGGGATCGGAGATCGTGTTCGCCATATTGCTCTGTGGGACCCTTTCATGCACCGCTCAAGCTCATCACATCACTGCCAGCACCTGCCCGGCTCGCTCCATCCTCGATTTCGTGTTAGGGTTTTCAGATTTCACATGCCAACTTCCCAATTCTCTTGGATCCATTGCCGTCACCGAGGGAGATGAGGTTTCTTTGCAGAAGGTTCTGAATATGGTTCACAAGAACAATCATGAGCACGTGGCTGTGCTCTTCTATGCGTCCTTGTGTCCTTTCTCACAGGTGTCTAGACCGGTTTTCTCCATCCTCTCTGCCCTGTACCCTTCCATTCTTCATCTTGCCATTGAAGAATCATCAGTTTGGCCGAGCACACTGTCCAAATATGGTGTCCATAGTTTCCCTACACTGTACATCTTGAATTCTACCATGCGGGTTCGGTATCATGGGTCTCGGACGCTTGGCTCGCTCATTGGTTTCTACAATGATGTTACTGGGATTAGGATTGATTCACTTGATGAACTATCACTTGAGGAAATTGGCCGTTCATCTGCTGATAAGAGTCATGGTAACAGTGAGTCAGAAAGTTCTCCATTTTCACAGGCTAGATCTCCAGAAAATTTACTATATCAGGAGACTTATTTGGCTCTGGCCACTACATTTGTGATTTTGAGATTACTATACTTGTTTTTTCCTAATCTTCTTATATGTATTCAATATGCTTGGAGAAGGGTCATCCAAAATATTAGATTAGGGAGCTTGCTGGAACACCCTTTGATTTATTTGAAGCGGCTAACACAGTCATTTAACCGTTTGAAAGAGCCATACAAGAGAAGTAATCTGCAGGAAGGAGCAATGAATGCTAGAGCATGGGCTTCCAAGTCCCTTGCCACCGTTTCAATTGGAGAGGAAAGCAGCAGCAGCCGTGGGACGCATCAGTGA
Predicted protein sequences of Glyma06g10790
>Glyma06g10790.1   sequence type=predicted peptide   gene model=Glyma06g10790   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRIWGSEIVFAILLCGTLSCTAQAHHITASTCPARSILDFVLGFSDFTCQLPNSLGSIAVTEGDEVSLQKVLNMVHKNNHEHVAVLFYASLCPFSQVSRPVFSILSALYPSILHLAIEESSVWPSTLSKYGVHSFPTLYILNSTMRVRYHGSRTLGSLIGFYNDVTGIRIDSLDELSLEEIGRSSADKSHGNSESESSPFSQARSPENLLYQETYLALATTFVILRLLYLFFPNLLICIQYAWRRVIQNIRLGSLLEHPLIYLKRLTQSFNRLKEPYKRSNLQEGAMNARAWASKSLATVSIGEESSSSRGTHQ*






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