Glyma06g10670 - SoyBase

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Report for Sequence Feature Glyma06g10670

Feature Type:	gene_model
Chromosome:	Gm06
Start:	8065885
stop:	8070470
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g10670

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G22410	AT	Annotation by Michelle Graham. TAIR10: Class-II DAHP synthetase family protein \| chr1:7912120-7914742 FORWARD LENGTH=527	SoyBase	E_val: 0	ISS
GO:0009073	GO-bp	Annotation by Michelle Graham. GO Biological Process: aromatic amino acid family biosynthetic process	SoyBase	N/A	ISS
GO:0009611	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to wounding	SoyBase	N/A	ISS
GO:0009627	GO-bp	Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance	SoyBase	N/A	ISS
GO:0009805	GO-bp	Annotation by Michelle Graham. GO Biological Process: coumarin biosynthetic process	SoyBase	N/A	ISS
GO:0034976	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0003849	GO-mf	Annotation by Michelle Graham. GO Molecular Function: 3-deoxy-7-phosphoheptulonate synthase activity	SoyBase	N/A	ISS
PTHR21337	Panther	PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE 1, 2	JGI		ISS
PF01474	PFAM	Class-II DAHP synthetase family	JGI		ISS
UniRef100_A9PF21	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 2-dehydro-3-deoxyphosphoheptonate aldolase/ 3-deoxy-d-arabino-heptulosonate 7-phosphate synthetase n=1 Tax=Populus trichocarpa RepID=A9PF21_POPTR	SoyBase	E_val: 0	ISS
UniRef100_I1K9W3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1K9W3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g10670

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g10670 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g101700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g10670

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g10670

Limit To All Plant Sequences

>Glyma06g10670.1   sequence type=CDS   gene model=Glyma06g10670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGCCACTGCTTCCAACTCTCTCCTTTGCACCAAAACGCTAGTCCCAACCCTCCCTTCTTCCTCCAACAACCTCAACAACAGCAACCTATGCTCCTCCTTTCCCAGGCCCAGGCCCAGGCCCATCCAGGCCCTGAACAACTCCGTGACTGTAATAACCGACAAGAAGTGCGAGGCAAAGTGGGTGGTGGACAGCTGGAAGTCCAAAAAGGCTCTTCAACTCCCGGAATACCCGGAGCAAGAGAAGCTCCAGTCGGTGCTCAAGAGCCTGGAAGCCTTCCCTCCGATTGTGTTTGCCGGAGAGGCCCGCAACCTCGAGGAGCGCCTCGCCCAGGCTTCCATGGGAAACGCGTTCCTCCTCCAGGGCGGAGACTGCGCTGAGAGCTTCAAGGAGTTTCATGCAAATAACATTCGTGACACCTTCAGACTCCTCCTCCAAATGAGTGTCGTCACCATGTTCGGAGCCCAAGTGCCTGTCATTAAGGTGGGAAGAATGGCGGGTCAATTTGCGAAACCGAGATCGGAAGCGTTTGAGGAGAAAGACGGGGTGAAACTCCCAAGTTACAGAGGAGATAATGTGAATGGAGATGCTTTCGAGGAGAAAACGAGAATTCCTGATCCTGAAAGAATGATCAGATCATACAGCCAATCTGCTGCGACTCTCAATCTTCTGAGAGCATTTGCGACGGGAGGATATGCTGCTATGCAAAGGGTTAGCCAATGGAATTTGGACTTCACGCAACACAGCGAGCAAGGAGACAGGTACCTAGAGCTTGCTCGCCGAATTGATGAGACCCTTGGGTTCATGGCTGCTGCTGGCCTCACAATGGATCATCCTATAATGAAAACAACCGAGTTTTGGACTTCACATGAATGTTTGTTATTGCCCTATGAACAATCACTCACTAGGTTGGATTCAACTTCTGGTCTCTACTATGACTGCTCCGCCCATATGCTTTGGGTTGGTGAACGGACTAGACAGCTCGATGGTGCTCATGTTGAATTTCTAAGAGGGATTGCTAATCCCCTTGGAATTAAGGTAAGTGATAAGATCGATCCAAAGGAGCTTATTAGACTAATAGAGATCTTGAATCCCCAGAACAAGCCAGGGAGAATAACTGTGATAACGAGGATGGGAGCTGAAAATACGAGGGCGAAACTTCCACATCTGATCAGGGGAGTACGCAATGCGGGACTAATTGTATGTTGGGTCAGTGATCCTATGCATGGAAACACCATAAAAGCTCCCTGTGGACTCAAAACTCGCCCCTTCCATTCCATCATGGAGGAGGTGAAATCATTCTTCGACGTGCATGAACAAGAAGGAAGCCACCCAGGTGGGGTTCATCTAGAGATGACAGGTCAGAATGTGACTGAGTGCATTGGTGGGTCAAAGATGGTCACCTTTGATGATCTCAGCTCACGCTACAACACTCACTGTGACCCCAGGCTTAATGCTTCACAGTCTCTTGAGCTTGCTTTCATCATTTCTGAACGCCTCAAAAAGAATAGGATCGGGTCAAATCTGAACAATGTTTTTTCTCTATAG

Predicted protein sequences of Glyma06g10670

Limit To All Plant Sequences

>Glyma06g10670.1   sequence type=predicted peptide   gene model=Glyma06g10670   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAATASNSLLCTKTLVPTLPSSSNNLNNSNLCSSFPRPRPRPIQALNNSVTVITDKKCEAKWVVDSWKSKKALQLPEYPEQEKLQSVLKSLEAFPPIVFAGEARNLEERLAQASMGNAFLLQGGDCAESFKEFHANNIRDTFRLLLQMSVVTMFGAQVPVIKVGRMAGQFAKPRSEAFEEKDGVKLPSYRGDNVNGDAFEEKTRIPDPERMIRSYSQSAATLNLLRAFATGGYAAMQRVSQWNLDFTQHSEQGDRYLELARRIDETLGFMAAAGLTMDHPIMKTTEFWTSHECLLLPYEQSLTRLDSTSGLYYDCSAHMLWVGERTRQLDGAHVEFLRGIANPLGIKVSDKIDPKELIRLIEILNPQNKPGRITVITRMGAENTRAKLPHLIRGVRNAGLIVCWVSDPMHGNTIKAPCGLKTRPFHSIMEEVKSFFDVHEQEGSHPGGVHLEMTGQNVTECIGGSKMVTFDDLSSRYNTHCDPRLNASQSLELAFIISERLKKNRIGSNLNNVFSL*

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