Glyma06g10650 - SoyBase

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Report for Sequence Feature Glyma06g10650

Feature Type:	gene_model
Chromosome:	Gm06
Start:	8046834
stop:	8049365
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g10650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G78300	AT	Annotation by Michelle Graham. TAIR10: general regulatory factor 2 \| chr1:29461883-29463052 FORWARD LENGTH=259	SoyBase	E_val: 3.00E-160	ISS
GO:0009742	GO-bp	Annotation by Michelle Graham. GO Biological Process: brassinosteroid mediated signaling pathway	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0005773	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuole	SoyBase	N/A	ISS
GO:0005774	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0019904	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein domain specific binding	SoyBase	N/A	ISS
GO:0045309	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein phosphorylated amino acid binding	SoyBase	N/A	ISS
KOG0841	KOG	Multifunctional chaperone (14-3-3 family)	JGI		ISS
PTHR18860	Panther	14-3-3	JGI		ISS
PF00244	PFAM	14-3-3 protein	JGI		ISS
UniRef100_E9KNA4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: SGF14h n=1 Tax=Glycine max RepID=E9KNA4_SOYBN	SoyBase	E_val: 2.00E-175	ISS
UniRef100_I1K9V7	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9V7_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g10650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g10650 not represented in the dataset	Glyma06g10650 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g10650

Paralog	Evidence	Comments
Glyma04g10820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g10650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g101500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g10650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g10650

Limit To All Plant Sequences

>Glyma06g10650.2   sequence type=transcript   gene model=Glyma06g10650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCGCTAATGTAAATGACAGAGTGAGAGAGAGGGACGCACCAACCTTTTCCGCCACACACAACACAGAGAACAGAGAAAGAGTATCAAAACCCCGTGTCTGACAGCTGTCTCTTTTTTCTTATTTCCAATTTCAAGATATTAATAAATAAATAAATCATCGATCCAACGGTCCATATTCAATCTCCAAAACGACCCCTCCCACGCTTCTCAAAACGCAATTATCGGACGCAATAGCCTCAAAACCACCCTTTACCCTTTCCCTTTCGTCCTTCTCCGTCTCCCCTCATTTGCTCACTTTCTCTCTCTAACCAGATCTCGCACTCGCGCTTTAACTCTCTAGGATTCGACGACAATGGCGGCCGCTCCCTCGCCTCGCGAAGAGAACGTCTACATGGCGAAGCTCGCCGAGCAGGCCGAGCGCTACGAAGAGATGGTGGAGTTCATGGAGAAGGTCTCCGCCGCCGCCGACAACGAGGAACTTACCGTGGAGGAGAGGAACCTCCTCTCCGTCGCCTACAAGAACGTGATCGGAGCGCGCCGCGCCTCGTGGCGCATCATCTCCTCGATCGAGCAGAAGGAGGAGAGCCGCGGCAACGAGGATCACGTCTCCGTCATCCGCGACTACCGATCCAAGATCGAGTCCGAGCTCTCCAACATCTGCGACGGTATCCTCAAGCTCCTCGACTCTCGCCTCATTCCATCCGCTTCCTCCGGCGATTCCAAGGTCTTCTACCTCAAGATGAAGGGAGATTACCACAGATACCTTGCCGAGTTCAAGACCGGCGCCGAGCGTAAGGAGGCTGCCGAGAGCACTCTCTCTGCATACAAAGCCGCACAGGACATTGCGAATGCCGAACTGCCTCCTACTCATCCAATTAGGCTTGGCCTTGCTCTTAACTTTTCTGTATTTTACTACGAAATCCTTAATTCTCCGGATCGTGCCTGCAACCTTGCAAAACAGGCTTTTGATGAAGCTATTGCTGAATTGGATACACTGGGAGAGGAGTCATACAAGGATAGCACTTTGATCATGCAACTCCTTCGTGATAACCTCACACTTTGGACCTCTGACATGCAGGACGATGGAGCAGATGAAATTAAAGAAGCAGCACCGAAACCGGATGACCAGTAAAAATATTTTACTGCTAATTAGAATTGAACTTCTCCTCCATATCTTTTTGAAGGGAGAAGGTGTTTGTTGCTAATATCTCTTTGGTACTGGGATTTTAGGCATTCATGTCTGTTATGAATTGTGGATGTACTGGGCCGTTTTAGTTTGTCCTTCCATTTTCTCAAGTGTTTTCCAAATTGCCTATTTTATTAAGGACACTGAAGTTTTTATTATATGGAATTGGAATTTTAAGATTCTCTTCTATCTAGTAAACTTTGTTACCGGCTTTTATTGTGAGGATTAGATATATTTGTATTCTTTTTGAAGCCTCGAAATTTGAATTTAGCTTGATTGGAATTGGAATTGGGTTGTGCTCGTTGAACTA

>Glyma06g10650.3   sequence type=transcript   gene model=Glyma06g10650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCGCTAATGTAAATGACAGAGTGAGAGAGAGGGACGCACCAACCTTTTCCGCCACACACAACACAGAGAACAGAGAAAGAGTATCAAAACCCCGTGTCTGACAGCTGTCTCTTTTTTCTTATTTCCAATTTCAAGATATTAATAAATAAATAAATCATCGATCCAACGGTCCATATTCAATCTCCAAAACGACCCCTCCCACGCTTCTCAAAACGCAATTATCGGACGCAATAGCCTCAAAACCACCCTTTACCCTTTCCCTTTCGTCCTTCTCCGTCTCCCCTCATTTGCTCACTTTCTCTCTCTAACCAGATCTCGCACTCGCGCTTTAACTCTCTAGGATTCGACGACAATGGCGGCCGCTCCCTCGCCTCGCGAAGAGAACGTCTACATGGCGAAGCTCGCCGAGCAGGCCGAGCGCTACGAAGAGATGGTGGAGTTCATGGAGAAGGTCTCCGCCGCCGCCGACAACGAGGAACTTACCGTGGAGGAGAGGAACCTCCTCTCCGTCGCCTACAAGAACGTGATCGGAGCGCGCCGCGCCTCGTGGCGCATCATCTCCTCGATCGAGCAGAAGGAGGAGAGCCGCGGCAACGAGGATCACGTCTCCGTCATCCGCGACTACCGATCCAAGATCGAGTCCGAGCTCTCCAACATCTGCGACGGTATCCTCAAGCTCCTCGACTCTCGCCTCATTCCATCCGCTTCCTCCGGCGATTCCAAGGTCTTCTACCTCAAGATGAAGGGAGATTACCACAGATACCTTGCCGAGTTCAAGACCGGCGCCGAGCGTAAGGAGGCTGCCGAGAGCACTCTCTCTGCATACAAAGCCGCACAGGACATTGCGAATGCCGAACTGCCTCCTACTCATCCAATTAGGCTTGGCCTTGCTCTTAACTTTTCTGTATTTTACTACGAAATCCTTAATTCTCCGGATCGTGCCTGCAACCTTGCAAAACAGGTTAGATTCAGAGATAGTGAATATCATGGCCTTTGTTTTGCTCTGTTTATTTGTGTTTTACTATATTTTGAGCAAAGTTTTGGATGTTTAACGTGAAAAGAGGAAGGAATTCGGCCATATACAGTGAAATTTGCAGCTATTGTTGTCCATTGATTTGAATAACTTTATGGCTACTGCATGTTGCATTTCGTTAATGTCGAAGCAATAATGATGTTACTGGTTGGATTCTAGCGGCTAAATATGAATTTGTAATATGGTTTGTACAGTTGTTCCTCCTTTACCTGTAGCTTAAATGAGTTGTCAAATATTTATTGGGTTTCACAGTAGGTGTTTGGAATTCTAATAGTTATAGCTAGCAAACAATAATCAATCAATATTTGACTTCTTAATCTAGATACTGGTATAGATGGGAATCTGACCTTGAGGAATACCCGTTGAATAAATTCT

>Glyma06g10650.4   sequence type=transcript   gene model=Glyma06g10650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TCGCTAATGTAAATGACAGAGTGAGAGAGAGGGACGCACCAACCTTTTCCGCCACACACAACACAGAGAACAGAGAAAGAGTATCAAAACCCCGTGTCTGACAGCTGTCTCTTTTTTCTTATTTCCAATTTCAAGATATTAATAAATAAATAAATCATCGATCCAACGGTCCATATTCAATCTCCAAAACGACCCCTCCCACGCTTCTCAAAACGCAATTATCGGACGCAATAGCCTCAAAACCACCCTTTACCCTTTCCCTTTCGTCCTTCTCCGTCTCCCCTCATTTGCTCACTTTCTCTCTCTAACCAGATCTCGCACTCGCGCTTTAACTCTCTAGGATTCGACGACAATGGCGGCCGCTCCCTCGCCTCGCGAAGAGAACGTCTACATGGCGAAGCTCGCCGAGCAGGCCGAGCGCTACGAAGAGATGGTGGAGTTCATGGAGAAGGTCTCCGCCGCCGCCGACAACGAGGAACTTACCGTGGAGGAGAGGAACCTCCTCTCCGTCGCCTACAAGAACGTGATCGGAGCGCGCCGCGCCTCGTGGCGCATCATCTCCTCGATCGAGCAGAAGGAGGAGAGCCGCGGCAACGAGGATCACGTCTCCGTCATCCGCGACTACCGATCCAAGATCGAGTCCGAGCTCTCCAACATCTGCGACGGTATCCTCAAGCTCCTCGACTCTCGCCTCATTCCATCCGCTTCCTCCGGCGATTCCAAGGTCTTCTACCTCAAGATGAAGGGAGATTACCACAGATACCTTGCCGAGTTCAAGACCGGCGCCGAGCGTAAGGAGGCTGCCGAGAGCACTCTCTCTGCATACAAAGCCGCACAGGTTAGCCGTTTTTTTCTCTTTTCAAATTTTTATCTGATTTTGTGATTCAGATCTGTTCGGTTTATTCTCCAGATTTGAGATTTCGTTTTATTGTTTTCCGATTTTTGTTATTCTGACTATGGAATCTATGTGATTATTTACTCGATGCGGTTCTGTGGAGCGGTTATGCGTTATTCTTTTTCTTGGTTAAAATGTTTTGGCTAATATGAATTTTAACTGCTATTATTTTTCAATTGCAAATGAAATAATAATATATCTGCGCGCTTTTATTCTGTACAATTTGAATTGAACGATTTCCGTTGTGTTGCTTTTGTTTATTCTAGTCTTACTCTATTGTTTTAACGAATGGGCGTGTTCCTTTGTTTTTCAGGACATTGCGAATGCCGAACTGCCTCCTACTCATCCAATTAGGCTTGGCCTTGCTCTTAACTTTTCTGTATTTTACTACGAAATCCTTAATTCTCCGGATCGTGCCTGCAACCTTGCAAAACAGGCTTTTGATGAAGCTATTGCTGAATTGGATACACTGGGAGAGGAGTCATACAAGGATAGCACTTTGATCATGCAACTCCTTCGTGATAACCTCACACTTTGGACCTCTGACATGCAGGACGATGGAGCAGATGAAATTAAAGAAGCAGCACCGAAACCGGATGACCAGTAAAAATATTTTACTGCTAATTAGAATTGAACTTCTCCTCCATATCTTTTTGAAGGGAGAAGGTGTTTGTTGCTAATATCTCTTTGGTACTGGGATTTTAGGCATTCATGTCTGTTATGAATTGTGGATGTACTGGGCCGTTTTAGTTTGTCCTTCCATTTTCTCAAGTGTTTTCCAAATTGCCTATTTTATTAAGGACACTGAAGTTTTTATTATATGGAATTGGAATTTTAAGATTCTCTTCTATCTAGTAAACTTTGTTACCGGCTTTTATTGTGAGGATTAGATATATTTGTATTCTTTTTGAAGCCTCGAAATTTGAATTTAGCTTGATTGGAATTGG

Coding sequences of Glyma06g10650

Limit To All Plant Sequences

>Glyma06g10650.1   sequence type=CDS   gene model=Glyma06g10650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCCGCTCCCTCGCCTCGCGAAGAGAACGTCTACATGGCGAAGCTCGCCGAGCAGGCCGAGCGCTACGAAGAGATGGTGGAGTTCATGGAGAAGGTCTCCGCCGCCGCCGACAACGAGGAACTTACCGTGGAGGAGAGGAACCTCCTCTCCGTCGCCTACAAGAACGTGATCGGAGCGCGCCGCGCCTCGTGGCGCATCATCTCCTCGATCGAGCAGAAGGAGGAGAGCCGCGGCAACGAGGATCACGTCTCCGTCATCCGCGACTACCGATCCAAGATCGAGTCCGAGCTCTCCAACATCTGCGACGGTATCCTCAAGCTCCTCGACTCTCGCCTCATTCCATCCGCTTCCTCCGGCGATTCCAAGGTCTTCTACCTCAAGATGAAGGGAGATTACCACAGATACCTTGCCGAGTTCAAGACCGGCGCCGAGCGTAAGGAGGCTGCCGAGAGCACTCTCTCTGCATACAAAGCCGCACAGGACATTGCGAATGCCGAACTGCCTCCTACTCATCCAATTAGGCTTGGCCTTGCTCTTAACTTTTCTGTATTTTACTACGAAATCCTTAATTCTCCGGATCGTGCCTGCAACCTTGCAAAACAGGCTTTTGATGAAGCTATTGCTGAATTGGATACACTGGGAGAGGAGTCATACAAGGATAGCACTTTGATCATGCAACTCCTTCGTGATAACCTCACACTTTGGACCTCTGACATGCAGATGAAATTAAAGAAGCAGCACCGAAACCGGATGACCAGTAAAAATATTTTACTGCTAATTAGAATTGAACTTCTCCTCCATATCTTTTTGAAGGGAGAAGGTGTTTGTTGCTAA

>Glyma06g10650.2   sequence type=CDS   gene model=Glyma06g10650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCCGCTCCCTCGCCTCGCGAAGAGAACGTCTACATGGCGAAGCTCGCCGAGCAGGCCGAGCGCTACGAAGAGATGGTGGAGTTCATGGAGAAGGTCTCCGCCGCCGCCGACAACGAGGAACTTACCGTGGAGGAGAGGAACCTCCTCTCCGTCGCCTACAAGAACGTGATCGGAGCGCGCCGCGCCTCGTGGCGCATCATCTCCTCGATCGAGCAGAAGGAGGAGAGCCGCGGCAACGAGGATCACGTCTCCGTCATCCGCGACTACCGATCCAAGATCGAGTCCGAGCTCTCCAACATCTGCGACGGTATCCTCAAGCTCCTCGACTCTCGCCTCATTCCATCCGCTTCCTCCGGCGATTCCAAGGTCTTCTACCTCAAGATGAAGGGAGATTACCACAGATACCTTGCCGAGTTCAAGACCGGCGCCGAGCGTAAGGAGGCTGCCGAGAGCACTCTCTCTGCATACAAAGCCGCACAGGACATTGCGAATGCCGAACTGCCTCCTACTCATCCAATTAGGCTTGGCCTTGCTCTTAACTTTTCTGTATTTTACTACGAAATCCTTAATTCTCCGGATCGTGCCTGCAACCTTGCAAAACAGGCTTTTGATGAAGCTATTGCTGAATTGGATACACTGGGAGAGGAGTCATACAAGGATAGCACTTTGATCATGCAACTCCTTCGTGATAACCTCACACTTTGGACCTCTGACATGCAGGACGATGGAGCAGATGAAATTAAAGAAGCAGCACCGAAACCGGATGACCAGTAA

>Glyma06g10650.3   sequence type=CDS   gene model=Glyma06g10650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCCGCTCCCTCGCCTCGCGAAGAGAACGTCTACATGGCGAAGCTCGCCGAGCAGGCCGAGCGCTACGAAGAGATGGTGGAGTTCATGGAGAAGGTCTCCGCCGCCGCCGACAACGAGGAACTTACCGTGGAGGAGAGGAACCTCCTCTCCGTCGCCTACAAGAACGTGATCGGAGCGCGCCGCGCCTCGTGGCGCATCATCTCCTCGATCGAGCAGAAGGAGGAGAGCCGCGGCAACGAGGATCACGTCTCCGTCATCCGCGACTACCGATCCAAGATCGAGTCCGAGCTCTCCAACATCTGCGACGGTATCCTCAAGCTCCTCGACTCTCGCCTCATTCCATCCGCTTCCTCCGGCGATTCCAAGGTCTTCTACCTCAAGATGAAGGGAGATTACCACAGATACCTTGCCGAGTTCAAGACCGGCGCCGAGCGTAAGGAGGCTGCCGAGAGCACTCTCTCTGCATACAAAGCCGCACAGGACATTGCGAATGCCGAACTGCCTCCTACTCATCCAATTAGGCTTGGCCTTGCTCTTAACTTTTCTGTATTTTACTACGAAATCCTTAATTCTCCGGATCGTGCCTGCAACCTTGCAAAACAGGTTAGATTCAGAGATAGTGAATATCATGGCCTTTGTTTTGCTCTGTTTATTTGTGTTTTACTATATTTTGAGCAAAGTTTTGGATGTTTAACGTGA

>Glyma06g10650.4   sequence type=CDS   gene model=Glyma06g10650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGGCCGCTCCCTCGCCTCGCGAAGAGAACGTCTACATGGCGAAGCTCGCCGAGCAGGCCGAGCGCTACGAAGAGATGGTGGAGTTCATGGAGAAGGTCTCCGCCGCCGCCGACAACGAGGAACTTACCGTGGAGGAGAGGAACCTCCTCTCCGTCGCCTACAAGAACGTGATCGGAGCGCGCCGCGCCTCGTGGCGCATCATCTCCTCGATCGAGCAGAAGGAGGAGAGCCGCGGCAACGAGGATCACGTCTCCGTCATCCGCGACTACCGATCCAAGATCGAGTCCGAGCTCTCCAACATCTGCGACGGTATCCTCAAGCTCCTCGACTCTCGCCTCATTCCATCCGCTTCCTCCGGCGATTCCAAGGTCTTCTACCTCAAGATGAAGGGAGATTACCACAGATACCTTGCCGAGTTCAAGACCGGCGCCGAGCGTAAGGAGGCTGCCGAGAGCACTCTCTCTGCATACAAAGCCGCACAGGTTAGCCGTTTTTTTCTCTTTTCAAATTTTTATCTGATTTTGTGA

Predicted protein sequences of Glyma06g10650

Limit To All Plant Sequences

>Glyma06g10650.1   sequence type=predicted peptide   gene model=Glyma06g10650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAAPSPREENVYMAKLAEQAERYEEMVEFMEKVSAAADNEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSVIRDYRSKIESELSNICDGILKLLDSRLIPSASSGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLSAYKAAQDIANAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQMKLKKQHRNRMTSKNILLLIRIELLLHIFLKGEGVCC*

>Glyma06g10650.2   sequence type=predicted peptide   gene model=Glyma06g10650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAAPSPREENVYMAKLAEQAERYEEMVEFMEKVSAAADNEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSVIRDYRSKIESELSNICDGILKLLDSRLIPSASSGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLSAYKAAQDIANAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDMQDDGADEIKEAAPKPDDQ*

>Glyma06g10650.3   sequence type=predicted peptide   gene model=Glyma06g10650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAAPSPREENVYMAKLAEQAERYEEMVEFMEKVSAAADNEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSVIRDYRSKIESELSNICDGILKLLDSRLIPSASSGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLSAYKAAQDIANAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQVRFRDSEYHGLCFALFICVLLYFEQSFGCLT*

>Glyma06g10650.4   sequence type=predicted peptide   gene model=Glyma06g10650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAAPSPREENVYMAKLAEQAERYEEMVEFMEKVSAAADNEELTVEERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEDHVSVIRDYRSKIESELSNICDGILKLLDSRLIPSASSGDSKVFYLKMKGDYHRYLAEFKTGAERKEAAESTLSAYKAAQVSRFFLFSNFYLIL*

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