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Report for Sequence Feature Glyma06g10630

Feature Type:gene_model
Chromosome:Gm06
Start:8037368
stop:8038966
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g10630
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G78310AT Annotation by Michelle Graham. TAIR10: VQ motif-containing protein | chr1:29464003-29464938 REVERSE LENGTH=311 SoyBaseE_val: 1.00E-54ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
PF05678PFAM VQ motif JGI ISS
UniRef100_I1K9V6UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9V6_SOYBN SoyBaseE_val: 0ISS
UniRef100_Q9M9F0UniRef Annotation by Michelle Graham. Most informative UniRef hit: F3F9.15 n=1 Tax=Arabidopsis thaliana RepID=Q9M9F0_ARATH SoyBaseE_val: 6.00E-52ISS

Proteins Associated with Glyma06g10630
LocusGene SymbolProtein Name
VQ21 VQ motif containing protein gene 21

Expression Patterns of Glyma06g10630
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g10630
ParalogEvidenceComments
Glyma04g10780 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g10630 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g101400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g10630
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g10630
>Glyma06g10630.1   sequence type=CDS   gene model=Glyma06g10630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATAAAAGCTGTCATCCCTCTAGCAATACTAGTATAAGCACATCCTCTGCTGCCAACCCCAACAACAATAGCAGGGATCAATATCTTCGCCATCTCAACAAGCTCTCTCAAAAGATCTCCAAACCCATCATTAAGAAACCCGTCTTTGATCCTCCTCAGGCCCAAGTCCCAAACAATCAGGTGCAGCATCAGCCGCCGGTGTACAACATCAACAAGAACGACTTCCGTGATGTGGTTCAGAAACTGACGGGCTCACCTGCGCACGACCGCATCTCAACGCCGCCTCCCATTCAGCCACCCAAGCCCCCGAGCTCTCGCCTTCAGAGGATTCGCCCTCCTCCCCTGCCTCAAATTACTAACCGCCCACCCCCGCTCCTTAACCCCACCACCCTCCCCCGCCCTCAACAACTCCCTAACGCCGTTACCTTCAACAACAACTTCTCCGTTTTTTCGAGACCCCCCGCGCCGTTATCTCCTCTGCCGCCGTTCCCCACCGTCCACGCCCCCGCTGAGTCACCTATCTCCGCCTACATGCGCGATCTGCAGACCCTCGTCGATGCAAACGCCAAGCACTTTTCAGGCTTTTCTCCCTTGCCTCCACCGCCTCTGGTTCAACCTCAACCTCAACCTCAACCTCAGCCTCAGCCTCAGCAAGAACAACAGCCACAGCAGCAGCAGCAAGGGATGGTTCCGTCGCAAGCGCCGTCGTCGTTTCAGATGCCGTCTTCGCCTGTGCCGTTTGGGTGTTTGAATTCGCAGCTGGCGTCCTACCCTCTGCTGTCGCCGGGGCTTCTGTTTTCCCCAACTTCTGGTCAGTTAGGGTTTCCGCAGCTTCCGCTTTCGCCCACTGTGCCGGTCCCTAGCCCTCGCTGGAAGGGAATTTGA
Predicted protein sequences of Glyma06g10630
>Glyma06g10630.1   sequence type=predicted peptide   gene model=Glyma06g10630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDKSCHPSSNTSISTSSAANPNNNSRDQYLRHLNKLSQKISKPIIKKPVFDPPQAQVPNNQVQHQPPVYNINKNDFRDVVQKLTGSPAHDRISTPPPIQPPKPPSSRLQRIRPPPLPQITNRPPPLLNPTTLPRPQQLPNAVTFNNNFSVFSRPPAPLSPLPPFPTVHAPAESPISAYMRDLQTLVDANAKHFSGFSPLPPPPLVQPQPQPQPQPQPQQEQQPQQQQQGMVPSQAPSSFQMPSSPVPFGCLNSQLASYPLLSPGLLFSPTSGQLGFPQLPLSPTVPVPSPRWKGI*






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