Glyma06g10610 - SoyBase

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Report for Sequence Feature Glyma06g10610

Feature Type:	gene_model
Chromosome:	Gm06
Start:	8016742
stop:	8023082
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g10610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G22460	AT	Annotation by Michelle Graham. TAIR10: O-fucosyltransferase family protein \| chr1:7927530-7930351 REVERSE LENGTH=565	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
PF10250	PFAM	GDP-fucose protein O-fucosyltransferase	JGI		ISS
UniRef100_G7J3Z2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DUF246 domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J3Z2_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A789	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A789 related cluster n=1 Tax=unknown RepID=UPI000233A789	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g10610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g10610

Paralog	Evidence	Comments
Glyma04g10740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g10610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g101200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g10610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g10610

Limit To All Plant Sequences

>Glyma06g10610.3   sequence type=transcript   gene model=Glyma06g10610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATACTTAAAAATTATGTTATTTATGGTATAAATATTTTAAGTTTTTATAAAAATTAAGTGTATAATTAAATTTTAAATTGTGAAAAAAATTTATCGATTCATTTTACTTTTTTATTTTCTTCTCCTTTAAATGTTTATTGAGAAATTATTTGGTTGAGACCTCAAATGAGTGTTTTAAATAAACTAAGACTTTTAATAATTTAAAGATGAATTAGTATTTTAATTTGTGCATTGTTCGTGATAAAATTTATTTTGTGATTAAAATTTATACTAAATAAAATTCAGAACAAATTAATTATATTAATTTCATATGATAAATAATTTATATTATAATACAATGATATTTTTTATTATTAATAATTTCTTTTAAAATTATTGGAATTCAAGTTAAAAGTTAAAACAACAATAAAAATGATAAATTGAGAGATAAGATGTTAAAAATTCCATAAAGATGCTCTTGTTGAATAAAGGCTTCTAAAAATACTCTAGTTAAAAAATCACAATCTAACATTATTTCTCTCAACCAATTTTTTTTCCACACTTAACACATTTTGTGATACATCCTCTTAAGTTCATTCTTTGTTATTAATTAAAATTTATTTTTATGAAATAAATGTTAACCAATAATAAATGAAGAAGTAAATTAAAAAAAAAAGTGTATTTATGAGGAGTTGCCAGCACTAGACAAATATACAGTAAAACTGAATCTAGCTATGAAAAGAGCAAGAGAGATGAACAAAAAGCGTGGGTCGCGAACGAGATCTGCAAGCACCATGATGCACGAACAATTTAAATTTTAATTCAATTAAGCACATAATTAGTTACAACATGGTAGTGCTATTACTGAAGAATAGGAGTAATAGTAATTCATAATTCGTTATAGATAAAAAAGAAATAGGGAAAAAGGAGCACGACGTTGAGAGAAAAAAAAGCCAAAACCGAACAAACAGAGCAAACAGCACCGCTTTTTTATTCACATCCTCCCTCACTGTCACTGCAAACTCATGAAGAACCCCACACTCCGAGGTTCATCTTTTTATTCTCAACATAACTGTTGAACCAACCTTATATTATACTTATAATAATTATACATTTATACCCTGTTTCTTATATTCAATATTACCATTACTATTAATAATAACGTGTAGAGAGAAGAGGAGGATCAATGCATAGGCGCAACAAGACGGTTGTTCCATTGGGCATGCTCAGAAGGTTTCTCGCCGCGTCCATATTCTCAATAGTCGTCACTTCTTTCTTCTTTGTTCACGTTCACGTTTCTCCTTCACCCACTGATCACAAGTTCAATGATAAGATCCCCTCGTTTCGTGACCCGCAAAGCTGGACTAGAGAACTCGCTCCGCCTCATCTATCCAAGGCTCCACTCTCTGTTCCCAAGTTGAAGGATTCAAGAAAGGATTCAGACTACGAGAAACTGTGGAAGCCTCCATCAAATCATGGGTTTATACCCTGTACAAAGCCTACTCCTAATTACTCAACTCCTGGAAGGTCACGTGGTTACCTTTCTGTTCATACAAATGGAGGGCTAAACCAAATGCGTACTGGGATATGTGATATGGTAGCTATAGCTCGTATCATAAATGCCACTCTTGTAATTCCAGAACTTGATAAAAAGTCATTTTGGCATGATACTAGCATTTTCTCTGATATCTTTGATGAAGAGTGGTTTATTAGTTCTCTAGCTAATGATATAAAAATCATTAAGAAGCTTCCCAAAAAACTGGTTAATGCAACCAAAATTGTCATGCAATTCAGAAGCTGGTCTGGTATGGATTACTATGAGAATGAGATTGCTGCCTTGTGGGATAATTTCAATGTAATTCGAGCTTCCAAATCTGATTCTCGGTTAGCAAATAACAACCTACCTCCAGAGATTCAGAAACTTCGCTGCCGTGCTTGTTATGAAGCTCTTCGCTTCTCTCCGCACATTGAAAAAATGGGAAAAATATTGGTGGAGAGAATGAAGTCATTCGGCCCTTATATTGCATTACATTTACGTTATGAGAAGGATATGCTTGCATTTAGTGGGTGCACACATGAATTATCTACAGCTGAGGCTGAAGAGCTACGGATTATCAGAGAGAATACTACTTATTGGAAAAGAAAGTATATTAACCCCATAGAAGAAAGGTCCAAAGGTTTTTGCCCCTTAACTCCAAAGGAAGTTGGAATTTTTCTTACTGCTCTTGGATACCCATCAAAGACTCCAATATATATTGCTGCTGGGGAGATATATGGGGGTGAGTCCCATATGACTGACCTGCAATCCCGCTATCCATTGTTAATGAGCAAGGAAAAGTTAGCATCCATTGAGGAGCTTGAACCCTTTTCTAGTCATGCGTCTCAAATGGCTGCTCTTGACTATATTGTATCGGTTGAAAGTGATGTATTTGTACATTCTTACCCTGGAAACATGGCAAAGGCTGTTGAAGGCCATCGTCGTTTTCTTGGGAGTGGAAGAACAATATCTCCTGATAGGAAAGCGCTTGTTCATCTGTTTGATAAACTGGCAAATGGATCAATGACTGAGGGGAGAACACTTTCTAATAAAATCATTGATCTCCACAAAAAACGGCTTGGCTTCTTCAGAAAGAGAAAAGGACCCGTTTCTGGAACAAAGGGCTTGGACAGGTTTCGCTCAGAAGAAACATTTTATGCAAACCCTTTACCTGGTTGTTTATGTCGGACAGAATCACTCAATATAAACGCTTCTCACTTCTCAGTATAGTTAGGCCAGAATAAAGCAAAAGCTTTTTCCTTTATATTGGTGAAAGGATTGTCACATGCACTTCCCTTTACTAACGTTTCAACACTAGATCAGCTGGAAGATGTTAAAAGGGTGTTGTCATAGTGTATATATTGATAGAAAAAAGAAGAAGAAGGAAGTATAATAGAAAGGAAAAGGAAGGAGGGGGGAAATAAATAAAGAAAGATGCAAGAGTTGATATACAAAGTTGGTGAGGGTGACTAAATCAGATTCTTGAGTGTGTGATTGGGTCTTTTGGAAGGCATGATTCGTTCATTCATTCAGTGAGCATTACTTGTTTATGTAAAGCTTTTTAGATTTGGCCTGGGACTCAAAATCACACATTATTGCAAATATTTTTGTTTTTGGTGAAATTCATTATTGGAAGTATTATTGCAAATATTTA

Coding sequences of Glyma06g10610

Limit To All Plant Sequences

>Glyma06g10610.2   sequence type=CDS   gene model=Glyma06g10610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAGAACCCCACACTCCGAGAGAGAAGAGGAGGATCAATGCATAGGCGCAACAAGACGGTTGTTCCATTGGGCATGCTCAGAAGGTTTCTCGCCGCGTCCATATTCTCAATAGTCGTCACTTCTTTCTTCTTTGTTCACGTTCACGTTTCTCCTTCACCCACTGATCACAAGTTCAATGATAAGATCCCCTCGTTTCGTGACCCGCAAAGCTGGACTAGAGAACTCGCTCCGCCTCATCTATCCAAGGCTCCACTCTCTGTTCCCAAGTTGAAGGATTCAAGAAAGGATTCAGACTACGAGAAACTGTGGAAGCCTCCATCAAATCATGGGTTTATACCCTGTACAAAGCCTACTCCTAATTACTCAACTCCTGGAAGGTCACGTGGTTACCTTTCTGTTCATACAAATGGAGGGCTAAACCAAATGCGTACTGGGATATGTGATATGGTAGCTATAGCTCGTATCATAAATGCCACTCTTGTAATTCCAGAACTTGATAAAAAGTCATTTTGGCATGATACTAGCATTTTCTCTGATATCTTTGATGAAGAGTGGTTTATTAGTTCTCTAGCTAATGATATAAAAATCATTAAGAAGCTTCCCAAAAAACTGGTTAATGCAACCAAAATTGTCATGCAATTCAGAAGCTGGTCTGGTATGGATTACTATGAGAATGAGATTGCTGCCTTGTGGGATAATTTCAATGTAATTCGAGCTTCCAAATCTGATTCTCGGTTAGCAAATAACAACCTACCTCCAGAGATTCAGAAACTTCGCTGCCGTGCTTGTTATGAAGCTCTTCGCTTCTCTCCGCACATTGAAAAAATGGGAAAAATATTGGTGGAGAGAATGAAGTCATTCGGCCCTTATATTGCATTACATTTACGTTATGAGAAGGATATGCTTGCATTTAGTGGGTGCACACATGAATTATCTACAGCTGAGGCTGAAGAGCTACGGATTATCAGAGAGAATACTACTTATTGGAAAAGAAAGTATATTAACCCCATAGAAGAAAGGTCCAAAGGTTTTTGCCCCTTAACTCCAAAGGAAGTTGGAATTTTTCTTACTGCTCTTGGATACCCATCAAAGACTCCAATATATATTGCTGCTGGGGAGATATATGGGGGTGAGTCCCATATGACTGACCTGCAATCCCGCTATCCATTGTTAATGAGCAAGGAAAAGTTAGCATCCATTGAGGAGCTTGAACCCTTTTCTAGTCATGCGTCTCAAATGGCTGCTCTTGACTATATTGTATCGGTTGAAAGTGATGTATTTGTACATTCTTACCCTGGAAACATGGCAAAGGCTGTTGAAGGCCATCGTCGTTTTCTTGGGAGTGGAAGAACAATATCTCCTGATAGGAAAGCGCTTGTTCATCTGTTTGATAAACTGGCAAATGGATCAATGACTGAGGGGAGAACACTTTCTAATAAAATCATTGATCTCCACAAAAAACGGCTTGGCTTCTTCAGAAAGAGAAAAGGACCCGTTTCTGGAACAAAGGGCTTGGACAGGTTTCGCTCAGAAGAAACATTTTATGCAAACCCTTTACCTGGTTGTTTATGTCGGACAGAATCACTCAATATAAACGCTTCTCACTTCTCAGTATAG

>Glyma06g10610.3   sequence type=CDS   gene model=Glyma06g10610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATAGGCGCAACAAGACGGTTGTTCCATTGGGCATGCTCAGAAGGTTTCTCGCCGCGTCCATATTCTCAATAGTCGTCACTTCTTTCTTCTTTGTTCACGTTCACGTTTCTCCTTCACCCACTGATCACAAGTTCAATGATAAGATCCCCTCGTTTCGTGACCCGCAAAGCTGGACTAGAGAACTCGCTCCGCCTCATCTATCCAAGGCTCCACTCTCTGTTCCCAAGTTGAAGGATTCAAGAAAGGATTCAGACTACGAGAAACTGTGGAAGCCTCCATCAAATCATGGGTTTATACCCTGTACAAAGCCTACTCCTAATTACTCAACTCCTGGAAGGTCACGTGGTTACCTTTCTGTTCATACAAATGGAGGGCTAAACCAAATGCGTACTGGGATATGTGATATGGTAGCTATAGCTCGTATCATAAATGCCACTCTTGTAATTCCAGAACTTGATAAAAAGTCATTTTGGCATGATACTAGCATTTTCTCTGATATCTTTGATGAAGAGTGGTTTATTAGTTCTCTAGCTAATGATATAAAAATCATTAAGAAGCTTCCCAAAAAACTGGTTAATGCAACCAAAATTGTCATGCAATTCAGAAGCTGGTCTGGTATGGATTACTATGAGAATGAGATTGCTGCCTTGTGGGATAATTTCAATGTAATTCGAGCTTCCAAATCTGATTCTCGGTTAGCAAATAACAACCTACCTCCAGAGATTCAGAAACTTCGCTGCCGTGCTTGTTATGAAGCTCTTCGCTTCTCTCCGCACATTGAAAAAATGGGAAAAATATTGGTGGAGAGAATGAAGTCATTCGGCCCTTATATTGCATTACATTTACGTTATGAGAAGGATATGCTTGCATTTAGTGGGTGCACACATGAATTATCTACAGCTGAGGCTGAAGAGCTACGGATTATCAGAGAGAATACTACTTATTGGAAAAGAAAGTATATTAACCCCATAGAAGAAAGGTCCAAAGGTTTTTGCCCCTTAACTCCAAAGGAAGTTGGAATTTTTCTTACTGCTCTTGGATACCCATCAAAGACTCCAATATATATTGCTGCTGGGGAGATATATGGGGGTGAGTCCCATATGACTGACCTGCAATCCCGCTATCCATTGTTAATGAGCAAGGAAAAGTTAGCATCCATTGAGGAGCTTGAACCCTTTTCTAGTCATGCGTCTCAAATGGCTGCTCTTGACTATATTGTATCGGTTGAAAGTGATGTATTTGTACATTCTTACCCTGGAAACATGGCAAAGGCTGTTGAAGGCCATCGTCGTTTTCTTGGGAGTGGAAGAACAATATCTCCTGATAGGAAAGCGCTTGTTCATCTGTTTGATAAACTGGCAAATGGATCAATGACTGAGGGGAGAACACTTTCTAATAAAATCATTGATCTCCACAAAAAACGGCTTGGCTTCTTCAGAAAGAGAAAAGGACCCGTTTCTGGAACAAAGGGCTTGGACAGGTTTCGCTCAGAAGAAACATTTTATGCAAACCCTTTACCTGGTTGTTTATGTCGGACAGAATCACTCAATATAAACGCTTCTCACTTCTCAGTATAG

Predicted protein sequences of Glyma06g10610

Limit To All Plant Sequences

>Glyma06g10610.2   sequence type=predicted peptide   gene model=Glyma06g10610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKNPTLRERRGGSMHRRNKTVVPLGMLRRFLAASIFSIVVTSFFFVHVHVSPSPTDHKFNDKIPSFRDPQSWTRELAPPHLSKAPLSVPKLKDSRKDSDYEKLWKPPSNHGFIPCTKPTPNYSTPGRSRGYLSVHTNGGLNQMRTGICDMVAIARIINATLVIPELDKKSFWHDTSIFSDIFDEEWFISSLANDIKIIKKLPKKLVNATKIVMQFRSWSGMDYYENEIAALWDNFNVIRASKSDSRLANNNLPPEIQKLRCRACYEALRFSPHIEKMGKILVERMKSFGPYIALHLRYEKDMLAFSGCTHELSTAEAEELRIIRENTTYWKRKYINPIEERSKGFCPLTPKEVGIFLTALGYPSKTPIYIAAGEIYGGESHMTDLQSRYPLLMSKEKLASIEELEPFSSHASQMAALDYIVSVESDVFVHSYPGNMAKAVEGHRRFLGSGRTISPDRKALVHLFDKLANGSMTEGRTLSNKIIDLHKKRLGFFRKRKGPVSGTKGLDRFRSEETFYANPLPGCLCRTESLNINASHFSV*

>Glyma06g10610.3   sequence type=predicted peptide   gene model=Glyma06g10610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHRRNKTVVPLGMLRRFLAASIFSIVVTSFFFVHVHVSPSPTDHKFNDKIPSFRDPQSWTRELAPPHLSKAPLSVPKLKDSRKDSDYEKLWKPPSNHGFIPCTKPTPNYSTPGRSRGYLSVHTNGGLNQMRTGICDMVAIARIINATLVIPELDKKSFWHDTSIFSDIFDEEWFISSLANDIKIIKKLPKKLVNATKIVMQFRSWSGMDYYENEIAALWDNFNVIRASKSDSRLANNNLPPEIQKLRCRACYEALRFSPHIEKMGKILVERMKSFGPYIALHLRYEKDMLAFSGCTHELSTAEAEELRIIRENTTYWKRKYINPIEERSKGFCPLTPKEVGIFLTALGYPSKTPIYIAAGEIYGGESHMTDLQSRYPLLMSKEKLASIEELEPFSSHASQMAALDYIVSVESDVFVHSYPGNMAKAVEGHRRFLGSGRTISPDRKALVHLFDKLANGSMTEGRTLSNKIIDLHKKRLGFFRKRKGPVSGTKGLDRFRSEETFYANPLPGCLCRTESLNINASHFSV*

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