Glyma06g10580 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g10580

Feature Type:	gene_model
Chromosome:	Gm06
Start:	8004000
stop:	8005179
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g10580

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_I1K9V4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9V4_SOYBN	SoyBase	E_val: 4.00E-130	ISS
UniRef100_Q9FQY9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Avr9/Cf-9 rapidly elicited protein 75 n=1 Tax=Nicotiana tabacum RepID=Q9FQY9_TOBAC	SoyBase	E_val: 3.00E-07	ISS

Expression Patterns of Glyma06g10580

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g10580

Paralog	Evidence	Comments
Glyma04g10730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g10580 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g100900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g10580

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g10580

Limit To All Plant Sequences

>Glyma06g10580.1   sequence type=CDS   gene model=Glyma06g10580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAGCCTTAGAATTCGACCACCTTTGAAGGACAAGGACATCATTGGGAGGTTCATGCCTGATGGTCGTTGTTGCAAGAAGCACCCCAAACACCGCCAATCACCCGGCGTATGTTCTCTTTGTTTGAGAGACAAGCTTTCTCAACTATCTTCGGCATGCTCATCTTCTTCTTCTTCGCGTAAAACAACATTCATTTCTTCGTGTCATTCGTCTTCCTCCTCTTCTTCTTTAACCTCCTATTGCTCCTCTTCCGCCTCTTCTTGCGCCTCTCCAACGCTTCCTTTCCCTTTTCATAAAGATTCAAAGAGTGGCTCCAATTCGGTTTCCATCTTTTTGTTGAGCGCAAAACCTGGTGGAATACTCAAAAGTAGGTCAATGAGCGTTGTTGCAACAAGGAGAAGAACAAAAGGTCAAGATGAAGGTGATGATCGTAATAAGAAGACTGGCATGAAAAGTGGGTTTTGGTCCAAGTTGCTTCATCCCAGAACCAAAAGCAAGAGAATGGAGGAGATCAAAGGCACTAAGCAGCTGGTTCATACTAGGTCTCTAATACAAACTGTGACATAG

Predicted protein sequences of Glyma06g10580

Limit To All Plant Sequences

>Glyma06g10580.1   sequence type=predicted peptide   gene model=Glyma06g10580   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASLRIRPPLKDKDIIGRFMPDGRCCKKHPKHRQSPGVCSLCLRDKLSQLSSACSSSSSSRKTTFISSCHSSSSSSSLTSYCSSSASSCASPTLPFPFHKDSKSGSNSVSIFLLSAKPGGILKSRSMSVVATRRRTKGQDEGDDRNKKTGMKSGFWSKLLHPRTKSKRMEEIKGTKQLVHTRSLIQTVT*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain