Glyma06g10570 - SoyBase

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Report for Sequence Feature Glyma06g10570

Feature Type:	gene_model
Chromosome:	Gm06
Start:	7998027
stop:	8001185
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g10570

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G40080	AT	Annotation by Michelle Graham. TAIR10: Mitochondrial ribosomal protein L27 \| chr5:16040190-16041529 REVERSE LENGTH=94	SoyBase	E_val: 5.00E-46	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR21338	Panther	MITOCHONDRIAL RIBOSOMAL PROTEIN L41	JGI		ISS
PF09809	PFAM	Mitochondrial ribosomal protein L27	JGI		ISS
UniRef100_G7JZ57	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Receptor-like protein kinase n=2 Tax=Medicago truncatula RepID=G7JZ57_MEDTR	SoyBase	E_val: 7.00E-45	ISS
UniRef100_I1K9V2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K9V2_SOYBN	SoyBase	E_val: 1.00E-59	ISS

Expression Patterns of Glyma06g10570

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g10570

Paralog	Evidence	Comments
Glyma04g10720	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g10570 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g100800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g10570

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g10570

Limit To All Plant Sequences

>Glyma06g10570.2   sequence type=transcript   gene model=Glyma06g10570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAATATTTTATACTGTTATACCACTATTTATTTATTAAATTATATATTTATCCTCCTCTTGTACCCTAAACCCTCACAGTCACGGTGCCACACTGCCCCTGTGTTTCTTCTTTCTCCACTTTCACTGATTATTCGTCGACGTTTCCAACCCAATTTGTTATCTCTCTGCGACTTCTAGAAAAAGATGCCTCTGGGACTCATCTTGGGAATAGGAAGGGCATTTCGAAGGAAGCGGCCATCTTCTCTTGACATTCTATCATCAAAACGTGCTCCTCGTGGTTATTACAAGGGAAAGAATTGCAAGCCTACTGGTTTCCACACTCGCAAAGGTGGGTATGTAGTGATGCAAGAAAAATTGCCAAATTATGTAGTTCCTGATTTGAGTGATTTCAAGCTCAAGCCATACGTATCTCAGTGTCCTATAGAAGCCAATACCTCTGAAGTTTCCTAAACGGCTAAATAACCTAATTGCATTGTGTAAGATACTTTTTTTGTAACTGCAGATGTTTTTCCAAGAATAGGAGTTGGCATGCCCTTCGTTTTTGTTGTTTGTTCTCTCCTTTTGAACTACAACGTCTCCAGTAATTATTGACCAGCACAAATGTTTGATATTTTGACAGGATATTAACCTATCAATCAATATCATTAATATATGTAATGCGATGAATGATTTGGACTATCAAAATTATCAATAATTTTCATCTGTTGTTCCCCGATTACTTTGGTTATGTTTGGATGGGTGGAGTTGTTAATAATCGAGTGGAATTGTAAAAGCTGAAAAGACCTTGAACCATTGTCTGGTTTTTTTTTATTAATTATTAATGAAAAGAGATTATCAAAGGTGGATTC

Coding sequences of Glyma06g10570

Limit To All Plant Sequences

>Glyma06g10570.1   sequence type=CDS   gene model=Glyma06g10570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAAAAGATGCCTCTGGGACTCATCTTGGGAATAGGAAGGGCATTTCGAAGGAAGCGGCCATCTTCTCTTGACATTCTATCATCAAAACGTGCTCCTCGTGGTTATTACAAGGGAAAGAATTGCAAGCCTACTGGTTTCCACACTCGCAAAGGTGGGTATGTAGTGATGCAAGAAAAATTGCCAAATTATGTAGTTCCTGATTTGAGTGATTTCAAGCTCAAGCCATACGTATCTCAGTGTCCTATAGAAGCCAATACCTCTGAAGTTTCCTAA

>Glyma06g10570.2   sequence type=CDS   gene model=Glyma06g10570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTCTGGGACTCATCTTGGGAATAGGAAGGGCATTTCGAAGGAAGCGGCCATCTTCTCTTGACATTCTATCATCAAAACGTGCTCCTCGTGGTTATTACAAGGGAAAGAATTGCAAGCCTACTGGTTTCCACACTCGCAAAGGTGGGTATGTAGTGATGCAAGAAAAATTGCCAAATTATGTAGTTCCTGATTTGAGTGATTTCAAGCTCAAGCCATACGTATCTCAGTGTCCTATAGAAGCCAATACCTCTGAAGTTTCCTAA

Predicted protein sequences of Glyma06g10570

Limit To All Plant Sequences

>Glyma06g10570.1   sequence type=predicted peptide   gene model=Glyma06g10570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKKMPLGLILGIGRAFRRKRPSSLDILSSKRAPRGYYKGKNCKPTGFHTRKGGYVVMQEKLPNYVVPDLSDFKLKPYVSQCPIEANTSEVS*

>Glyma06g10570.2   sequence type=predicted peptide   gene model=Glyma06g10570   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPLGLILGIGRAFRRKRPSSLDILSSKRAPRGYYKGKNCKPTGFHTRKGGYVVMQEKLPNYVVPDLSDFKLKPYVSQCPIEANTSEVS*

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