Glyma06g10555 - SoyBase

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Report for Sequence Feature Glyma06g10555

Feature Type:	gene_model
Chromosome:	Gm06
Start:	7988054
stop:	7997304
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g10555

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
KOG3908	KOG	Queuine-tRNA ribosyltransferase	JGI		ISS
PTHR11962	Panther	QUEUINE TRNA-RIBOSYLTRANSFERASE	JGI		ISS
PF01702	PFAM	Queuine tRNA-ribosyltransferase	JGI		ISS
UniRef100_E0CRP9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Queuine tRNA-ribosyltransferase n=1 Tax=Vitis vinifera RepID=E0CRP9_VITVI	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A788	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A788 related cluster n=1 Tax=unknown RepID=UPI000233A788	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g10555

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g10555 not represented in the dataset	Glyma06g10555 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g10555

Paralog	Evidence	Comments
Glyma04g10706	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g10555 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g100700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g10555

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g10555

Limit To All Plant Sequences

>Glyma06g10555.2   sequence type=transcript   gene model=Glyma06g10555   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TGGGTGGTTAGCACGAGCAGATAAGTATTCGGTGGTCAATTTTTATTTTTATTTTTTAAATTCTACTTCAAGAGATTAATATTAAAAGATTAGATAAAAGTGTTTAGTATCCTGAATGATCTTTTCGTATATGTAGGTTTGATTTCTTTTAATTCACTAAAAAATTGATGTTTTGCAAATTTTATTGGTTAAAAGATTAAATAAAAGTGTTTATTATTTACTATAGTAATTATGTTGTAGTAAATAGACTTTTACTAGGTGTATTTGAAATTTTGAATGGTGGTTAACTTAAAGTTGCGTTCGGTGTGAGGCTAGGACACATAACAAGAAACATGGTGACATGTTGTTTGTGATTGGCGCGTTACCCATAGGTATTGGGGTGAGCCGTGCAAAAAAAGTAGGAGGAGACAGAAGACACAGTGGAACAGCGAATTTTTTATTTTTTGGTCAAAGCGGGGTCTTTAGCATGTTTCGAGGGATGATGAGCGTGAAGGCTCCCATGGGTTGGTGTCTGTGTTTCAAACCAAACAATATTACAAATAAGGTGCGAACGCCACAACACCCTCGTAGCCGCCAAGGTATGCACCAACATAACAACTTTCCTTCGCATTAGCCCTACCCTAGTAGTTACCTTTACTCCTTCATTCGCCGCATCTCTCTCTCCGTACCTGATATACTACCTCTATTACCAGTGTGCTCCGTACTGCTTCCGAGACTAACGCGATGGCGCTTACTTTCGAGGTTCTTGGCAGATTCAACCGTGCTCGCGCTGCGAGGTTGAGACTCCCTCATTTTGTGTGCCAAACTCCGTTGTTTATGCCTGTGGGCACACAAGGAACAATAAAGGCATTGACAAATAGCCAGCTTGAGGATATTGGTTGCCAAATAATACTTGGAAATACATATCACTTGGCCCTTCGACCTACTTCTGAGCTTCTTGATGAAGTTGGTGGTCTTCATAATTTTATGAATTGGAAACGGGCTCTGCTTACAGACTCTGGTGGCTTTCAAATGGTTTCACTGTTGCATCTTGCTGATATCACAGAAAAAGGTGTGACATTTCAGTCACCAGTAGATGGAAAACCAATGCTTCTAACACCTGAGGAATCGATTCAAATCCAAAACCGAATTGGAGCAGATATCATTATGGCTCTCGATGATGTTGTAAAGACCACCATTACTGGTCCACGAATAGAGGAAGCCATGTATCGAACTCTTAGATGGATAGACAGATGTATAGCAGCTCACAAGAGACCTCATGATCAGAACTTGTTTGGTATCGTGCAAGGTGGTTTAGATCCCATATTGAGGGATATCTGTGTCAAAGGTTTGGTGGAGCGCAATTTGCCTGGCTATGCTATTGGTGGTCTTTCAGGCGGTGAAGATAAAAATTCATTTTGGCGAGTTGTTGCTCAGTGCACTGCTGCTTTGCCAGAGGACAAACCACGATATGTTATGGGAGTTGGTTATCCACTTGATATTGTTGTTTGTAGTGCTTTGGGTGCTGATATGTATGATTGTGTGTATCCTACCCGCACAGCACGCTTTGGCACTGCTCTTGTTCCTGAGGGAGTATTGAAACTAAAACACAAAGCAATGGCTGATGACACCCGTCCAATTGATCCTACTTGCCCTTGTATGGTTTGCAAGACCTACAGCAGGGCTTACATCCATTGCCTTGTGACAAAAGATGCAATGGGGTCTCAACTTTTGTCATATCATAATTTATACTACATGTTGCAGCTCAGTAGGAATCTACACTCTTCAATAGTTGAAGGAAGGTTTCCAGAATTTGTATGCGACTTTCTACGCAAAATGGTATGCTTGAGAAAATTACATCAACCTTGAATTTTGGTCACATTACATTGACTTTTGTTTTGAAATTGAAAAACTGTAATATATCTCTGTTGACATGATAATTTTTTCCAATTCTAGTGATTGTTAGACCTACTTACATGTTCATACTGCAGTTCCCGAAAGGTGATGTTCCTGAATGGGTCTGCGATGCTATGGAGGTGGCTGGAATCGACATTTCTTCCTGCTGTGCTCAGTTTTCATCATGCCAAGAACATGATTCCAAAAGTATGCCCGAAGAAGAAGTTAGTTTAGTGAGGTAAAAATGATATACACGGACCAACAGAAACATTGAAGAGATACACTATAGTTTACTATGATTTTTTCGGCATAAATTTTGTATCCTGCTTATGCCGCTTCAGTAAAAATTATCAAAGGTTAGGCTTATACTAGGTTCCTTTAGGGTTAGGTTCTTATTTATCACGCAGGCATCTGAAGATTCGTCTTGTATTCTAGAGAATGTAAAACGATGGATTCAAATTACACTTTGTGAGACGTTATACTGATAAGAGTAAAGCCAAAGCTTAAATGTAACTCCTTTACATCCACAAGTATATCTTTGTTCAATTTCCCCCAAAATGTCACTAAAAATTCTTGTAATAA

Coding sequences of Glyma06g10555

Limit To All Plant Sequences

>Glyma06g10555.1   sequence type=CDS   gene model=Glyma06g10555   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCTTACTTTCGAGGTTCTTGGCAGATTCAACCGTGCTCGCGCTGCGAGGTTGAGACTCCCTCATTTTGTGTGCCAAACTCCGTTGTTTATGCCTGTGGGCACACAAGGAACAATAAAGGCATTGACAAATAGCCAGCTTGAGGATATTGGTTGCCAAATAATACTTGGAAATACATATCACTTGGCCCTTCGACCTACTTCTGAGCTTCTTGATGAAGTTGGTGGTCTTCATAATTTTATGAATTGGAAACGGGCTCTGCTTACAGACTCTGGTGGCTTTCAAATGGTTTCACTGTTGCATCTTGCTGATATCACAGAAAAAGGTGTGACATTTCAGTCACCAGTAGATGGAAAACCAATGCTTCTAACACCTGAGGAATCGATTCAAATCCAAAACCGAATTGGAGCAGATATCATTATGGCTCTCGATGATGTTGTAAAGACCACCATTACTGGTCCACGAATAGAGGAAGCCATGTATCGAACTCTTAGATGGATAGACAGATGTATAGCAGCTCACAAGAGACCTCATGATCAGAACTTGTTTGGTATCGTGCAAGGTGGTTTAGATCCCATATTGAGGGATATCTGTGTCAAAGGTTTGGTGGAGCGCAATTTGCCTGGCTATGCTATTGGTGGTCTTTCAGGCGGTGAAGATAAAAATTCATTTTGGCGAGTTGTTGCTCAGTGCACTGCTGCTTTGCCAGAGGACAAACCACGATATGTTATGGGAGTTGGTTATCCACTTGATATTGTTGTTTGTAGTGCTTTGGGTGCTGATATGTATGATTGTGTGTATCCTACCCGCACAGCACGCTTTGGCACTGCTCTTGTTCCTGAGGGAGTATTGAAACTAAAACACAAAGCAATGGCTGATGACACCCGTCCAATTGATCCTACTTGCCCTTGTATGGTTTGCAAGACCTACAGCAGGGCTTACATCCATTGCCTTGTGACAAAAGATGCAATGGGGTCTCAACTTTTGTCATATCATAATTTATACTACATGTTGCAGCTCAGTAGGAATCTACACTCTTCAATAGTTGAAGGAAGGTTTCCAGAATTTGTATGCGACTTTCTACGCAAAATGTTCCCGAAAGGTGATGTTCCTGAATGGGTCTGCGATGCTATGGAGGTGGCTGGAATCGACATTTCTTCCTGCTGTGCTCAGTTTTCATCATGCCAAGAACATGATTCCAAAAGTATGCCCGAAGAAGAAGTTAGTTTAGTGAGGTAA

>Glyma06g10555.2   sequence type=CDS   gene model=Glyma06g10555   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGCTTACTTTCGAGGTTCTTGGCAGATTCAACCGTGCTCGCGCTGCGAGGTTGAGACTCCCTCATTTTGTGTGCCAAACTCCGTTGTTTATGCCTGTGGGCACACAAGGAACAATAAAGGCATTGACAAATAGCCAGCTTGAGGATATTGGTTGCCAAATAATACTTGGAAATACATATCACTTGGCCCTTCGACCTACTTCTGAGCTTCTTGATGAAGTTGGTGGTCTTCATAATTTTATGAATTGGAAACGGGCTCTGCTTACAGACTCTGGTGGCTTTCAAATGGTTTCACTGTTGCATCTTGCTGATATCACAGAAAAAGGTGTGACATTTCAGTCACCAGTAGATGGAAAACCAATGCTTCTAACACCTGAGGAATCGATTCAAATCCAAAACCGAATTGGAGCAGATATCATTATGGCTCTCGATGATGTTGTAAAGACCACCATTACTGGTCCACGAATAGAGGAAGCCATGTATCGAACTCTTAGATGGATAGACAGATGTATAGCAGCTCACAAGAGACCTCATGATCAGAACTTGTTTGGTATCGTGCAAGGTGGTTTAGATCCCATATTGAGGGATATCTGTGTCAAAGGTTTGGTGGAGCGCAATTTGCCTGGCTATGCTATTGGTGGTCTTTCAGGCGGTGAAGATAAAAATTCATTTTGGCGAGTTGTTGCTCAGTGCACTGCTGCTTTGCCAGAGGACAAACCACGATATGTTATGGGAGTTGGTTATCCACTTGATATTGTTGTTTGTAGTGCTTTGGGTGCTGATATGTATGATTGTGTGTATCCTACCCGCACAGCACGCTTTGGCACTGCTCTTGTTCCTGAGGGAGTATTGAAACTAAAACACAAAGCAATGGCTGATGACACCCGTCCAATTGATCCTACTTGCCCTTGTATGGTTTGCAAGACCTACAGCAGGGCTTACATCCATTGCCTTGTGACAAAAGATGCAATGGGGTCTCAACTTTTGTCATATCATAATTTATACTACATGTTGCAGCTCAGTAGGAATCTACACTCTTCAATAGTTGAAGGAAGGTTTCCAGAATTTGTATGCGACTTTCTACGCAAAATGGTATGCTTGAGAAAATTACATCAACCTTGA

Predicted protein sequences of Glyma06g10555

Limit To All Plant Sequences

>Glyma06g10555.1   sequence type=predicted peptide   gene model=Glyma06g10555   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALTFEVLGRFNRARAARLRLPHFVCQTPLFMPVGTQGTIKALTNSQLEDIGCQIILGNTYHLALRPTSELLDEVGGLHNFMNWKRALLTDSGGFQMVSLLHLADITEKGVTFQSPVDGKPMLLTPEESIQIQNRIGADIIMALDDVVKTTITGPRIEEAMYRTLRWIDRCIAAHKRPHDQNLFGIVQGGLDPILRDICVKGLVERNLPGYAIGGLSGGEDKNSFWRVVAQCTAALPEDKPRYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGTALVPEGVLKLKHKAMADDTRPIDPTCPCMVCKTYSRAYIHCLVTKDAMGSQLLSYHNLYYMLQLSRNLHSSIVEGRFPEFVCDFLRKMFPKGDVPEWVCDAMEVAGIDISSCCAQFSSCQEHDSKSMPEEEVSLVR*

>Glyma06g10555.2   sequence type=predicted peptide   gene model=Glyma06g10555   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALTFEVLGRFNRARAARLRLPHFVCQTPLFMPVGTQGTIKALTNSQLEDIGCQIILGNTYHLALRPTSELLDEVGGLHNFMNWKRALLTDSGGFQMVSLLHLADITEKGVTFQSPVDGKPMLLTPEESIQIQNRIGADIIMALDDVVKTTITGPRIEEAMYRTLRWIDRCIAAHKRPHDQNLFGIVQGGLDPILRDICVKGLVERNLPGYAIGGLSGGEDKNSFWRVVAQCTAALPEDKPRYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGTALVPEGVLKLKHKAMADDTRPIDPTCPCMVCKTYSRAYIHCLVTKDAMGSQLLSYHNLYYMLQLSRNLHSSIVEGRFPEFVCDFLRKMVCLRKLHQP*

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