SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G09020 | AT | Annotation by Michelle Graham. TAIR10: isoamylase 3 | chr4:5784099-5788839 FORWARD LENGTH=764 | SoyBase | E_val: 0 | ISS |
| GO:0000272 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process | SoyBase | N/A | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0005982 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch metabolic process | SoyBase | N/A | ISS |
| GO:0005983 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch catabolic process | SoyBase | N/A | ISS |
| GO:0009664 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization | SoyBase | N/A | ISS |
| GO:0019252 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009569 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast starch grain | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| GO:0004556 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: alpha-amylase activity | SoyBase | N/A | ISS |
| GO:0019156 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: isoamylase activity | SoyBase | N/A | ISS |
| GO:0043169 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: cation binding | SoyBase | N/A | ISS |
| KOG0470 | KOG | 1,4-alpha-glucan branching enzyme/starch branching enzyme II | JGI | ISS | |
| PTHR10357 | Panther | AMYLASE | JGI | ISS | |
| PTHR10357:SF75 | Panther | ALPHA-AMLYASE | JGI | ISS | |
| PF00128 | PFAM | Alpha amylase, catalytic domain | JGI | ISS | |
| PF02922 | PFAM | Carbohydrate-binding module 48 (Isoamylase N-terminal domain) | JGI | ISS | |
| UniRef100_A4PIT0 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Isoamylase-type starch-debranching enzyme 3 n=1 Tax=Phaseolus vulgaris RepID=A4PIT0_PHAVU | SoyBase | E_val: 0 | ISS |
| UniRef100_UPI000233A787 | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI000233A787 related cluster n=1 Tax=unknown RepID=UPI000233A787 | SoyBase | E_val: 0 | ISS |
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Glyma06g10540 not represented in the dataset |
Glyma06g10540 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g10693 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g100600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g10540.2 sequence type=CDS gene model=Glyma06g10540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGCTCCATCAGTTCACACTCTTCGCTCCGATTTTTTCCGGCGGAAACAACGCCGGCCGTTGCTCGTTTGCCGGAAATTCGTCCGTCCGTGACGTGAGGTCGTTGAGGTTTATGAAGCAAGCATCGGGAAGACAATCGAACAATGAACATGGTGTTTTTAGCGAGACAATGGATCGTGCCAAGCATAGGGCAACTACTGCTTATGGTGGTCGTGCTCAAGAAGGTGTTCTCGAGGAAGAATCCTCCAAGGTGATAGAGAGCAGACCATCATGGAAAGCTTTTCCAGGCCAGTCATTTCCATTGGGGGTATCAGAAGTTGACAGTGGCATCAATTTTGCTATTTTTTCACAAAATGCAACTGCTGTCACACTTTGTTTAGTCCTTCCTGAGAGGGGAAGCATTGACGCATTGGATGGTGGCATGATAGAAATGGTTTTGGATCCTGATTTGAACAAAACTGGGGACATTTGGCACATATGTATTGAGGATCTTCCACGAAGCAATGTTCTGTATGGATATCGCATAGATGGACCTCGAGACTGGGGTAAGGGGCATCGATTTGATAGCAGCATTGTGCTTGTCGATCCTTATGCGAAACTAGTTGAAGGTCGAAGATATTTCGGGGATATTAGCATGAAGTTGTCTAAGTTTCTTGGCACATATGATTTTGACAGCTTGCCTTTTGACTGGGGAGAAAATTACAAGCTTCCAAATATTTCTGAGAAAGATCTTGTTATATATGAGATGAATGTCCGTGCATTTACAAGTGATGAATCTAGTGGTTTGGATAGCAACATTCGTGGCAGCTACCTCGGTATGATTGAAAAGATTCCACACCTTCTAGAGCTTGGTATCAATGCAGTAGAGTTGCTGCCTGTCTTTGAGTTTGATGAGTTAGAATTCCAGAGGCGTCCAAATCCCAGAGATCACATGATTAATACATGGGGTTATTCGACAATAAATTTCTTTGCTCCTATGAGTCGCTATGCTAGTGCTGGTGGAGGATCAGTTAATGCTTCCCGAGAGTTCAAGCAAATGGTTAAATCCTTACATTCTGCTGGTATAGAGGTTATTTTGGATGTTGTCTACAATCATACTAATGAGGCTGATGATGCCTTTCCTTACACTACTTCATTTCGTGGCATAGATAATAAGGTTTATTACATGCTGGACAATAATGGGCAATTGCTGAACTTCTCTGGCTGTGGAAATACATTGAATTGTAATCATCCTGTGGTCATGGAGCTAATTCTTGACAGCCTAAGACACTGGGTCACCGAATACCATGTGGATGGATTTCGATTTGATCTTGCAAGTGTCCTGTGTCGAGGAATTGATGGCTCCCCCCTCAATGCACCCCCACTTATTAGGGCTATTGCTAAAGATGCAGTATTATCAAGATGTAAAATTATTGCAGAGCCTTGGGATTGTGGAGGTCTCTATCTTGTTGGGAGTTTTCCTAATTGGGATCGGTGGGCTGAATGGAATGGGAAATATCGTGATGATGTACGGAAATTTATTAAGGGTGATTCTGGTGTGAAGGGGAGCTTTGCAACTCGTGTAGCTGGGTCTTCTGATCTTTACAGTGTGAACAATCGTAGGCCATATCATGGTATTAACTTTGTTATTGCACATGACGGATTCACCTTGCGTGATCTTGTTTCATACAATTTCAAGCACAATGAAGCCAATGGGGAAGGTGGAAATGACGGAAGCAATGATAATTTTAGTTGGAATTGTGGTTTGGAAGGGGAAACTGATGATGCTAGTGTAAGAGCTTTGCGATCACGGCAAATGAAAAACTTCCATTTGGCATTAATGATATCTCAGGGTACACCAATGATGCTAATGGGGGATGAATATGGCCATACTCGCAATGGAAATAACAATAGTTATGGGCATGATACTGCCATTAATAATTTTTTGTGGGATCAGTTGGATGCACGGAAGAGTGATCACTTCCGGTTTTTCTCAAACATGATAAAGTACAGGCATGCACATGAAGTATTCAATCATGAAAGTTTTCTCAGCAAGAACGACATAACATGGCATGAAGACAATTGGGACAATCATGACAGCAAATTTCTTGCATTCACGCTTCATGACAAGAGCGGGGGAGATATCTATTTGGCATTTAATGCTCACGATTACTTTGTCAAAGTTCTGCTGCCGGCACCTCCAAAAAAGAGAAACTGGTTTCGTGTGGTGGACACTAATCTCAAATCACCGGATGACTTTGTCCTTGATGGTGTCCCTAACGTAGGAAACACGTACAATATAGCTCCATACTCCTCCATTCTTCTTGAGGCGAAGTTTTGA
>Glyma06g10540.2 sequence type=predicted peptide gene model=Glyma06g10540 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MLHQFTLFAPIFSGGNNAGRCSFAGNSSVRDVRSLRFMKQASGRQSNNEHGVFSETMDRAKHRATTAYGGRAQEGVLEEESSKVIESRPSWKAFPGQSFPLGVSEVDSGINFAIFSQNATAVTLCLVLPERGSIDALDGGMIEMVLDPDLNKTGDIWHICIEDLPRSNVLYGYRIDGPRDWGKGHRFDSSIVLVDPYAKLVEGRRYFGDISMKLSKFLGTYDFDSLPFDWGENYKLPNISEKDLVIYEMNVRAFTSDESSGLDSNIRGSYLGMIEKIPHLLELGINAVELLPVFEFDELEFQRRPNPRDHMINTWGYSTINFFAPMSRYASAGGGSVNASREFKQMVKSLHSAGIEVILDVVYNHTNEADDAFPYTTSFRGIDNKVYYMLDNNGQLLNFSGCGNTLNCNHPVVMELILDSLRHWVTEYHVDGFRFDLASVLCRGIDGSPLNAPPLIRAIAKDAVLSRCKIIAEPWDCGGLYLVGSFPNWDRWAEWNGKYRDDVRKFIKGDSGVKGSFATRVAGSSDLYSVNNRRPYHGINFVIAHDGFTLRDLVSYNFKHNEANGEGGNDGSNDNFSWNCGLEGETDDASVRALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRNGNNNSYGHDTAINNFLWDQLDARKSDHFRFFSNMIKYRHAHEVFNHESFLSKNDITWHEDNWDNHDSKFLAFTLHDKSGGDIYLAFNAHDYFVKVLLPAPPKKRNWFRVVDTNLKSPDDFVLDGVPNVGNTYNIAPYSSILLEAKF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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