Glyma06g10470 - SoyBase

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Report for Sequence Feature Glyma06g10470

Feature Type:	gene_model
Chromosome:	Gm06
Start:	7944713
stop:	7946845
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g10470

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G72210	AT	Annotation by Michelle Graham. TAIR10: basic helix-loop-helix (bHLH) DNA-binding superfamily protein \| chr1:27180066-27182268 FORWARD LENGTH=320	SoyBase	E_val: 8.00E-94	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PTHR11534	Panther	MYOGENIC FACTOR	JGI		ISS
PTHR11534:SF7	Panther	MYOGENIC FACTOR MYF-5	JGI		ISS
PF00010	PFAM	Helix-loop-helix DNA-binding domain	JGI		ISS
UniRef100_F0V437	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Basic helix loop helix 1 n=1 Tax=Medicago truncatula RepID=F0V437_MEDTR	SoyBase	E_val: 4.00E-144	ISS
UniRef100_I1K9U4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9U4_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g10470

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g10470

Paralog	Evidence	Comments
Glyma04g10630	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g10470 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g100000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g10470

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g10470

Limit To All Plant Sequences

>Glyma06g10470.1   sequence type=CDS   gene model=Glyma06g10470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCACTAGAGGCTGTGGTTTTCCCGCAAGATCCATTTGCGTATGGTTGCAACAAGGATTATTTGTACTCCTTAGTTGGAGCAACACCCAACTACGGTAATTTCCAAGCAGCGGAAGAAGAGAAAGTCCTCCTAGGAATCATCAACAACAACATAGAACACAACCTTTATGCAAATTGGGATTCATCTTCTACCTCAATGTTGCAAAATGTCAAGGAACAACAATGGGATTCTCACTCCTCCCCTGAAGCATGCACCGTTGAACAATCCGTGACAACCCCTTCTTTTCCTCCTCCTCCTCCTCCTTCTTCCTCCGTGGAAGCCACCGTGACCACCACGAGCCGCCGTAAACGACGCCGCACCAAGAGCGCCAAGAACAAGGAGGAAATCGAGAACCAGAGGATGACGCACATTGCTGTTGAACGCAATCGCCGAAAACAGATGAATGAGTACTTGGCCGTGCTCCGATCCTTGATGCCTTCCTCTTATGTTCAAAGGGGTGACCAAGCCTCTATTATTGGAGGGGCCATAAACTTTGTGAAGGAGTTGGAGCAGCTTTTGCAGTCGATGGAGGGCCAAAAGAGAACGAACCAAGGGAAAGAGAATGTTGTTGGGTTAAATGGGACGTCGAGAACAACAACAACAACACCCTTTGCTGAGTTCTTCGCGTTTCCTCAATACACGACACGTGGTACGACGATGGCACAGAACAACCAGGAGCAGAAACAGTGGGCCGTAGCAGACATTGAAGTGACCATGGTGGATAACCATGCCAATCTAAAGGTACTATCAAAGAAACAACCTGGGCAGATTATGAAGATCGTTGTTGGGCTTCAAAGTCTCAAGCTCAGCATTCTCCACCTTAATGTTTCCACTCTTGATGATATGGTCCTTTACTCAGTTAGCGTCAAGGTAGAGGACGGGTGTCTGCTGAACACGGTGGATGAAATTGCGGCTGCAGTGAATCAACTATTACGCACAATCCAAGAAGTTACTTTCAGCTGA

Predicted protein sequences of Glyma06g10470

Limit To All Plant Sequences

>Glyma06g10470.1   sequence type=predicted peptide   gene model=Glyma06g10470   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALEAVVFPQDPFAYGCNKDYLYSLVGATPNYGNFQAAEEEKVLLGIINNNIEHNLYANWDSSSTSMLQNVKEQQWDSHSSPEACTVEQSVTTPSFPPPPPPSSSVEATVTTTSRRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPSSYVQRGDQASIIGGAINFVKELEQLLQSMEGQKRTNQGKENVVGLNGTSRTTTTTPFAEFFAFPQYTTRGTTMAQNNQEQKQWAVADIEVTMVDNHANLKVLSKKQPGQIMKIVVGLQSLKLSILHLNVSTLDDMVLYSVSVKVEDGCLLNTVDEIAAAVNQLLRTIQEVTFS*

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