Glyma06g10420 - SoyBase

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Report for Sequence Feature Glyma06g10420

Feature Type:	gene_model
Chromosome:	Gm06
Start:	7894383
stop:	7895971
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g10420

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G28230	AT	Annotation by Michelle Graham. TAIR10: purine permease 1 \| chr1:9862200-9864554 REVERSE LENGTH=356	SoyBase	E_val: 7.00E-133	ISS
GO:0006863	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine nucleobase transport	SoyBase	N/A	ISS
GO:0010184	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinin transport	SoyBase	N/A	ISS
GO:0015931	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleobase-containing compound transport	SoyBase	N/A	ISS
GO:0005887	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005345	GO-mf	Annotation by Michelle Graham. GO Molecular Function: purine nucleobase transmembrane transporter activity	SoyBase	N/A	ISS
GO:0015211	GO-mf	Annotation by Michelle Graham. GO Molecular Function: purine nucleoside transmembrane transporter activity	SoyBase	N/A	ISS
KOG2234	KOG	Predicted UDP-galactose transporter	JGI		ISS
PF00892	PFAM	EamA-like transporter family	JGI		ISS
PF03151	PFAM	Triose-phosphate Transporter family	JGI		ISS
UniRef100_G7J4H5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Purine permease n=1 Tax=Medicago truncatula RepID=G7J4H5_MEDTR	SoyBase	E_val: 1.00E-167	ISS
UniRef100_UPI000233A784	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A784 related cluster n=1 Tax=unknown RepID=UPI000233A784	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g10420

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g10420

Paralog	Evidence	Comments
Glyma04g10550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g10420 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g099400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g10420

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g10420

Limit To All Plant Sequences

>Glyma06g10420.2   sequence type=CDS   gene model=Glyma06g10420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGAAGGAAGAAGCGAAGAAGACAAAGACGACAGAACCATGAAGCGCCTTCTTCTCACGACAAACTGTCTCTTACTCACCATCGGCACCTCCGGTGGGCCCCTCGTCATGCGTCTCTACTTCCTCCACGGCGGCCACCGCGTCTGGCTCTCCAGCTTCCTCGAAACCGCTGGCTTCCCCCTCATGCTCCTCCCCCTCGCCGTCTCCTACCTCCGCCGACGTCGCACCGCCTCCGCCGCCGGAACCGCCAAACCGAAATTAATCTCAATGAAGCCTCCTCTCCTCGCCGCCTCCACCTTCATCGGAATTCTCACCGGCCTCGACGACTACCTCTACGCCTACGGCGTGGCGAGGCTTCCGGTCTCCACTTCCGCCCTCATCATCGCAACGCAACTCGGCTTCACCGCGTTCTTCGCTTTCCTTCTCGTGAGGCAGAAGTTCACCGCGTACTCCATAAACGCCGTCGTTATGCTCACTGTCGGCGCTGGCGTTTTGGCGCTTCACACCAGCGGAGACCGGCCCCCTGGCGAGTCCGTTAAGGAATATGTTATGGGCTTTGTCATGACAGTTATCGCTGCGGCATTGTATGGGTTCCCTCTTACTTACTCTCTTGTCATGGAGATTCAGTTCGTTATGTGCTTCTCGGCAACGCTATTTTGCCTCCTTGGAATGATCATAAATAACGACTTTAAGGTGATTCCGAGGGAAGCAAAACAATTTGAGCACGGGGAAGGAAGTTACTATGCTGTTTTGGTGGGGAGTGCAATAATATGGCAGGCTTTTTTCTTGGGAGCGATTGGGGTTATATTTTGTGCCTCGTCTTTGTTTTCTGGTATTTTGATTGCGGTGTTGCTACCTGTAACCGAAGTGTTGGCGGTTATTTTCTACAAAGAAAAGTTTCAAGCCGAAAAAGGGGTTTCTCTGTTGCTCTCGCTTTGGGGCATGGTGTCCTACTTCTATGGGGAGATTAAACATTCTAGAAAAAGGAAGAAGAAGAACAGTGACCCTGAGGCAGAACCGTCTCAGTATTCGTGA

Predicted protein sequences of Glyma06g10420

Limit To All Plant Sequences

>Glyma06g10420.2   sequence type=predicted peptide   gene model=Glyma06g10420   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEGRSEEDKDDRTMKRLLLTTNCLLLTIGTSGGPLVMRLYFLHGGHRVWLSSFLETAGFPLMLLPLAVSYLRRRRTASAAGTAKPKLISMKPPLLAASTFIGILTGLDDYLYAYGVARLPVSTSALIIATQLGFTAFFAFLLVRQKFTAYSINAVVMLTVGAGVLALHTSGDRPPGESVKEYVMGFVMTVIAAALYGFPLTYSLVMEIQFVMCFSATLFCLLGMIINNDFKVIPREAKQFEHGEGSYYAVLVGSAIIWQAFFLGAIGVIFCASSLFSGILIAVLLPVTEVLAVIFYKEKFQAEKGVSLLLSLWGMVSYFYGEIKHSRKRKKKNSDPEAEPSQYS*

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