Glyma06g10370 - SoyBase

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Report for Sequence Feature Glyma06g10370

Feature Type:	gene_model
Chromosome:	Gm06
Start:	7863858
stop:	7867564
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g10370

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G14600	AT	Annotation by Michelle Graham. TAIR10: Target SNARE coiled-coil domain protein \| chr4:8376562-8378078 FORWARD LENGTH=137	SoyBase	E_val: 7.00E-52	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3385	KOG	V-SNARE	JGI		ISS
PTHR12791	Panther	GOLGI SNARE BET1-RELATED	JGI		ISS
PTHR12791:SF17	Panther	SUBFAMILY NOT NAMED	JGI		ISS
UniRef100_G7KBG1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Bet1-like protein n=1 Tax=Medicago truncatula RepID=G7KBG1_MEDTR	SoyBase	E_val: 4.00E-58	ISS
UniRef100_I1K9T5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9T5_SOYBN	SoyBase	E_val: 3.00E-99	ISS

Expression Patterns of Glyma06g10370

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g10370

Paralog	Evidence	Comments
Glyma04g10510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g10370 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g098800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g10370

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g10370

Limit To All Plant Sequences

>Glyma06g10370.2   sequence type=transcript   gene model=Glyma06g10370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AATGAGAGCATGTATTGGGACAAAATTGTAACTTGCAATTTGCAATTAATTGAATGCGTTCACGAAACGTTGGCTTTCAAGTTGAAATGAAAATTGTGTGGAACTCATTTTTCCCCATTTTGTGAAATTCAATTCCAAGGGTTTCCATTTTCCATTTCAATGTCTTCCCATTCGCACAAAGGCACCTCCTTCTACGGCGATGCCGCCCCTTATCGATCCAGAGAGGGGCTTAGCACTCGACCCGTTGCATCCTCCGATGAAATCCAATTGCACATCGATCCCGGCATCGACTTCGACGACGAAATCACCGGTCTTCGTGGCCAAGTTAAAAAATTGAAAAATGTTGCTGAAGAGATAGGTTCAGAAGTCAAGTTTCAAAGAGATTTTCTGGAACAAGTGCAAATGGTAATGATACAAGCTCAAGCTGGGGTCAAGAATAACTTAAGAAGATTGAACAAGAGCATCGTCAAAAATGGTTCCAACAATATTGTTCATGTGATTGCTTTTGCATTAGTCTGTTTCTTTATAGTATACTTCTGGTCAAAGATGTCCAGAAAATGATGGCTCGTAGTTGAAAGATTTTATTCAAAGCTTTTTTCGGTTGACTCATTATGATGCCTAATCTTGTACAGAAAAGCTACACTTACTGTTGCAGTTTACAGTTAAAAATTCTTCGACTTCAAAGTTACGTGTCTTGGTCGAAGCAGTAGTTTTGTGTAATAGACAGGATAATTGCTTGTTTAATAGATTGCAAAAGCCTCTTTTCTCTTAAAAATATCATGTGAACGTCTGTAGTAGTTAATAAAATCCTTGAACTTTATTCAGTAAATGGCACCA

Coding sequences of Glyma06g10370

Limit To All Plant Sequences

>Glyma06g10370.1   sequence type=CDS   gene model=Glyma06g10370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGCCCCTTATCGATCCAGGTTTGTTTGTTTTTTACTCTCTCTTTCCCTTTCTCTTGTTCAATTCAATTTCTTGCGTGAATTGCAGAGAGGGGCTTAGCACTCGACCCGTTGCATCCTCCGATGAAATCCAATTGCACATCGATCCCGGCATCGACTTCGACGACGAAATCACCGGTCTTCGTGGCCAAGTTAAAAAATTGAAAAATGTTGCTGAAGAGATAGGTTCAGAAGTCAAGTTTCAAAGAGATTTTCTGGAACAAGTGCAAATGGTAATGATACAAGCTCAAGCTGGGGTCAAGAATAACTTAAGAAGATTGAACAAGAGCATCGTCAAAAATGGTTCCAACAATATTGTTCATGTGATTGCTTTTGCATTAGTCTGTTTCTTTATAGTATACTTCTGGTCAAAGATGTCCAGAAAATGA

>Glyma06g10370.2   sequence type=CDS   gene model=Glyma06g10370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTTCCCATTCGCACAAAGGCACCTCCTTCTACGGCGATGCCGCCCCTTATCGATCCAGAGAGGGGCTTAGCACTCGACCCGTTGCATCCTCCGATGAAATCCAATTGCACATCGATCCCGGCATCGACTTCGACGACGAAATCACCGGTCTTCGTGGCCAAGTTAAAAAATTGAAAAATGTTGCTGAAGAGATAGGTTCAGAAGTCAAGTTTCAAAGAGATTTTCTGGAACAAGTGCAAATGGTAATGATACAAGCTCAAGCTGGGGTCAAGAATAACTTAAGAAGATTGAACAAGAGCATCGTCAAAAATGGTTCCAACAATATTGTTCATGTGATTGCTTTTGCATTAGTCTGTTTCTTTATAGTATACTTCTGGTCAAAGATGTCCAGAAAATGA

Predicted protein sequences of Glyma06g10370

Limit To All Plant Sequences

>Glyma06g10370.1   sequence type=predicted peptide   gene model=Glyma06g10370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPPLIDPGLFVFYSLFPFLLFNSISCVNCREGLSTRPVASSDEIQLHIDPGIDFDDEITGLRGQVKKLKNVAEEIGSEVKFQRDFLEQVQMVMIQAQAGVKNNLRRLNKSIVKNGSNNIVHVIAFALVCFFIVYFWSKMSRK*

>Glyma06g10370.2   sequence type=predicted peptide   gene model=Glyma06g10370   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSHSHKGTSFYGDAAPYRSREGLSTRPVASSDEIQLHIDPGIDFDDEITGLRGQVKKLKNVAEEIGSEVKFQRDFLEQVQMVMIQAQAGVKNNLRRLNKSIVKNGSNNIVHVIAFALVCFFIVYFWSKMSRK*

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