Glyma06g10350 - SoyBase

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Report for Sequence Feature Glyma06g10350

Feature Type:	gene_model
Chromosome:	Gm06
Start:	7834931
stop:	7843838
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g10350

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G24460	AT	Annotation by Michelle Graham. TAIR10: CRT (chloroquine-resistance transporter)-like transporter 2 \| chr4:12642888-12645310 FORWARD LENGTH=431	SoyBase	E_val: 6.00E-139	ISS
GO:0002229	GO-bp	Annotation by Michelle Graham. GO Biological Process: defense response to oomycetes	SoyBase	N/A	ISS
GO:0034635	GO-bp	Annotation by Michelle Graham. GO Biological Process: glutathione transport	SoyBase	N/A	ISS
GO:0046686	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cadmium ion	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
KOG3912	KOG	Predicted integral membrane protein	JGI		ISS
PF08627	PFAM	CRT-like	JGI		ISS
UniRef100_I1K9T3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9T3_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q2QQ06	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2QQ06_ORYSJ	SoyBase	E_val: 6.00E-134	ISS

Expression Patterns of Glyma06g10350

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g10350

Paralog	Evidence	Comments
Glyma04g10451	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g10350 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g098600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g10350

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g10350

Limit To All Plant Sequences

>Glyma06g10350.2   sequence type=transcript   gene model=Glyma06g10350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGGACTTGGAAGTGATCTAAGTTGGTTGAAAGTGAGAGCAATGTCGTTCGCAGTGGCATTGTGTTCAACGTCGTCGTTCTTCCCTTCAGGTTTCGCAATTCGCAATCCAAAGCAGCTTCAACCTTTCGTTTCAATGTCACTGTCTTCGAAGCTACCGTTGCATTTCTCCGGCAATGCCAGATTCAACCGCAACCACCCAACCATGTTCAAAATTCGAGCCTCAAATTCAAACTCTTCATCTTCATCCAAACTCGTCTTATTTAGCTCCACTATCGTCGTCACAACAGCGGTAGCGAATCGCGTGCTCTACAAATTGGCCCTTGTTCCCATGAAAGAGTACCCCTTTTTTCTCGCTCAGTTCATAACTTTTGGGTATGTTGTTATATATTTCTCGATCTTGTATTTCCGGTACCGGGCGAGAATTGTGACCGATGAGATGCTGGCGATTCCGAAATTGCGCTTTGTGGCCATTGGCTTTCTAGAAGCTTTAGGATTGGTTTCCGGAATGTCCGCTGCAGCTGTACTTCCTGGACCAGTCATACCCATATTGAATCAGACTTTTTTGGTTTGGCAGCTAATGTTTTCTACTCTTCTCTTGAGAAGAAGGTACTCAATCAATCAATTGGTTGGGTGCTTACTTGTAGCTGTTGGTGTTGTGGTGGCTATTACAAGTGGTTCAAATACAGGTCAGATGCTCTCTGAAGTTCAGTTCTTTTGGCCAGCATTGATGATAATCTCATGTTCCTTTCAAGCTTGGGCTTCTGTAATGAAGGAGTCTATTTTCATTGATTCTGCTACTCAATTAAAGCACAAGTCACTGGACATATTTGTGGTTAATTCTTTCGGATCTGGGTTTCAGGAACCAAGCACGGGAAAGAGAACAACCTAGCTTCGAGGGCTAGGAACCTCCATAAGAGAAGAAGGAGAGAGAGAGCGAGAGAGAGACAACTTTTCTGATATTTTTCATTCCTTCTTGCAGAAGGCGATACATACCCTTATATACTCGCTACTAGGGAACAAGTTCCCGACAATAATAACCAAAAAGATAGTGCAATCCTAACAGAATTATTCACCACTACAAAGGCACTACCAGCTACTACGCACTTCATATATGTGGATGCATGCTGCATGGGTCATAGCTAACCATGCTGTACATACTCTGTGTGTTGCTTTCCTTTTGGGTCTCACTCATGCTTTTTGCTTCTTGCAGACCCCTTACTTCCTGTAGTCCCATATTACTATCCCTATCATTCCCGCCCTCATCAAAAACACCTTGTCCTCAAGGTGTTGGGGTTCCACGCATTGCCTCCACAAGTGATACCAGGATCCCAAGGTTTATTTCGGCGAATTGCACCTGGTTTAGTAGTTGTGCATAATGCAACGACCACTGATGGGAGCTTGTATGCGGCCATGGCAGCCCCATAAGGAGGAACAATGGTGAAGAGCTTGTTGAAGGAAATGGTGGTGCGAACGAGACCGGACAGATGAAAAACCAGCATAGGAAGCGGGCCCGGCAAGGTTGTTGGCTGCGGCTGTATGGGTACCAAAGGCGGAAGTGGTGGCGTAGGGGGCAGCGGAGGCATCATGGCTGGTGGAGGTGGCACGGTCGTGGGTGCGGTGAGCCTGGGTGATGGAGTTGGCTTGAGCGGCGGAGGCAACAACGAAGGTGGCGGAGTCTGTGATAGAGGCAGTAACGGTGCAGGACTTGGTTGTATGGGTGCGGAGCATGGAGGCCAAGTCGGTATGGAAAGCGAAGGCGGCGGTGGTGACTGCGCAAAGGAAGAAGATGGAAGGTGGTGGTTGGTTCTCGGAGGCAGTTTAAGGAGAAGGGCGTCCAGTTGGGAGTCGAGGCGGCATGTAGTGGCATCAAGTTTGGCCAAGGCGACCTCAAGGCGGTCCTCAGCAGCCATTGAAGCTTCGTTTGGCGACAAGTAGTGTGGGTGGTGGTAGTGGAAGGTGGAAGCTCCGTACAGCGAGTGGCAGCCATGGAAGCTCCGTATGGCAAGTGGCAGCCATGGAAGCTCCGTTTGGTGGTTGCTGAAATGAAGGAAGGGTTCTCTCGGGATCGAACAAGCTCAGCAAATGTTTGCGGGTACTCTCAAAATCAATCCCAAGGGATTGAGCTGGATGTACAAAGGGAGGAGGGGTGTGCGGCAACGAAGGTGTGTGGAAATGGGTATGGCGGCCATGGACTCTCAACGAGAGCACCAAATGTTAGGAACCAAGCACGAGAAAGAGAACTAGCTTCAAGGGCTAGGAACCTCCATAAGAGAAGAAGGAGAGCGAGAGCGAGAGAGAGAGGCGACTTTTCTGATATTTTTCATTCCTTCTTGCAGAAGGCGATACATACCCTTATATACTCACTACTAGGGAACAAGTTCCCGACAATAATAACCAAAAAGATAGCGCAATCCTAACAGAATTATTCACCACTACAAAGGCACTATCAGCTACTACGCACTTTATATATGTGGATGCATGCTGCATGGGTCATAGCTAACCATGCTGTACATACTCTGTGTGTTGCTTTCCTTTTGGGTCTCACTCACGCTTTTTGCTTCTTGCAGACCCTTACTTCCTGTAGTCCCATATTACTATCCCTATCATTATGACAATAAGCTTTCTAGATTAGCTCATGAAAGATCATGGAAACAGTTTAATCCTATTTTTTCTTCGATTATAAAAACAACTTATACATGAATGTGTACTTAATAATAAATACTTATTCGTTAAATTCTTAATTGAGTTGTTTACTCAAACAGACCTTTAATTGAGGTATGTCAAGC

Coding sequences of Glyma06g10350

Limit To All Plant Sequences

>Glyma06g10350.1   sequence type=CDS   gene model=Glyma06g10350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGGACTTGGAAGTGATCTAAGTTGGTTGAAAGTGAGAGCAATGTCGTTCGCAGTGGCATTGTGTTCAACGTCGTCGTTCTTCCCTTCAGGTTTCGCAATTCGCAATCCAAAGCAGCTTCAACCTTTCGTTTCAATGTCACTGTCTTCGAAGCTACCGTTGCATTTCTCCGGCAATGCCAGATTCAACCGCAACCACCCAACCATGTTCAAAATTCGAGCCTCAAATTCAAACTCTTCATCTTCATCCAAACTCGTCTTATTTAGCTCCACTATCGTCGTCACAACAGCGGTAGCGAATCGCGTGCTCTACAAATTGGCCCTTGTTCCCATGAAAGAGTACCCCTTTTTTCTCGCTCAGTTCATAACTTTTGGGTATGTTGTTATATATTTCTCGATCTTGTATTTCCGGTACCGGGCGAGAATTGTGACCGATGAGATGCTGGCGATTCCGAAATTGCGCTTTGTGGCCATTGGCTTTCTAGAAGCTTTAGGATTGGTTTCCGGAATGTCCGCTGCAGCTGTACTTCCTGGACCAGTCATACCCATATTGAATCAGACTTTTTTGGTTTGGCAGCTAATGTTTTCTACTCTTCTCTTGAGAAGAAGGTACTCAATCAATCAATTGGTTGGGTGCTTACTTGTAGCTGTTGGTGTTGTGGTGGCTATTACAAGTGGTTCAAATACAGGTCAGATGCTCTCTGAAGTTCAGTTCTTTTGGCCAGCATTGATGATAATCTCATGTTCCTTTCAAGCTTGGGCTTCTGTAATGAAGGAGTCTATTTTCATTGATTCTGCTACTCAATTAAAGCACAAGTCACTGGACATATTTGTGGTTAATTCTTTCGGATCTGGGTTTCAGGCTCTTTTCGTACTTTTGTCTCTACCAATACTTTCTAACTTGAGAGGCATACCATTTGCACAACTTCCTTCGTATTTTAAAAGTGGTGCCGGTTGCTTTCTAAACCTTGGAGCCGATAATCCAAATTGTGATGGTGCCCCCTTGCTTCCACTACTTTACGTAATTATCAACTTGGCATTCAACATATCCCTGCTTAATGCAGTAAAAACTTCGTCTGCAGTTGTGGCTTCCCTTCTGGTAATGTTGTCAGTGCCAATTTCTGTTTATATTCTTTCCCTTCCATTACCATATCTTCCAGAGGGAACAAGCCTGAGCCCATTTTTTTTGCTTGGCTGTGCAATTCTTCTATGTGGTCTTTTTCTGTACAACACAACGAGACCTGTGAGGAGCAGTTCTGAAGATGACTGA

>Glyma06g10350.2   sequence type=CDS   gene model=Glyma06g10350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTTGGACTTGGAAGTGATCTAAGTTGGTTGAAAGTGAGAGCAATGTCGTTCGCAGTGGCATTGTGTTCAACGTCGTCGTTCTTCCCTTCAGGTTTCGCAATTCGCAATCCAAAGCAGCTTCAACCTTTCGTTTCAATGTCACTGTCTTCGAAGCTACCGTTGCATTTCTCCGGCAATGCCAGATTCAACCGCAACCACCCAACCATGTTCAAAATTCGAGCCTCAAATTCAAACTCTTCATCTTCATCCAAACTCGTCTTATTTAGCTCCACTATCGTCGTCACAACAGCGGTAGCGAATCGCGTGCTCTACAAATTGGCCCTTGTTCCCATGAAAGAGTACCCCTTTTTTCTCGCTCAGTTCATAACTTTTGGGTATGTTGTTATATATTTCTCGATCTTGTATTTCCGGTACCGGGCGAGAATTGTGACCGATGAGATGCTGGCGATTCCGAAATTGCGCTTTGTGGCCATTGGCTTTCTAGAAGCTTTAGGATTGGTTTCCGGAATGTCCGCTGCAGCTGTACTTCCTGGACCAGTCATACCCATATTGAATCAGACTTTTTTGGTTTGGCAGCTAATGTTTTCTACTCTTCTCTTGAGAAGAAGGTACTCAATCAATCAATTGGTTGGGTGCTTACTTGTAGCTGTTGGTGTTGTGGTGGCTATTACAAGTGGTTCAAATACAGGTCAGATGCTCTCTGAAGTTCAGTTCTTTTGGCCAGCATTGATGATAATCTCATGTTCCTTTCAAGCTTGGGCTTCTGTAATGAAGGAGTCTATTTTCATTGATTCTGCTACTCAATTAAAGCACAAGTCACTGGACATATTTGTGGTTAATTCTTTCGGATCTGGGTTTCAGGAACCAAGCACGGGAAAGAGAACAACCTAG

Predicted protein sequences of Glyma06g10350

Limit To All Plant Sequences

>Glyma06g10350.1   sequence type=predicted peptide   gene model=Glyma06g10350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
VGLGSDLSWLKVRAMSFAVALCSTSSFFPSGFAIRNPKQLQPFVSMSLSSKLPLHFSGNARFNRNHPTMFKIRASNSNSSSSSKLVLFSSTIVVTTAVANRVLYKLALVPMKEYPFFLAQFITFGYVVIYFSILYFRYRARIVTDEMLAIPKLRFVAIGFLEALGLVSGMSAAAVLPGPVIPILNQTFLVWQLMFSTLLLRRRYSINQLVGCLLVAVGVVVAITSGSNTGQMLSEVQFFWPALMIISCSFQAWASVMKESIFIDSATQLKHKSLDIFVVNSFGSGFQALFVLLSLPILSNLRGIPFAQLPSYFKSGAGCFLNLGADNPNCDGAPLLPLLYVIINLAFNISLLNAVKTSSAVVASLLVMLSVPISVYILSLPLPYLPEGTSLSPFFLLGCAILLCGLFLYNTTRPVRSSSEDD*

>Glyma06g10350.2   sequence type=predicted peptide   gene model=Glyma06g10350   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
VGLGSDLSWLKVRAMSFAVALCSTSSFFPSGFAIRNPKQLQPFVSMSLSSKLPLHFSGNARFNRNHPTMFKIRASNSNSSSSSKLVLFSSTIVVTTAVANRVLYKLALVPMKEYPFFLAQFITFGYVVIYFSILYFRYRARIVTDEMLAIPKLRFVAIGFLEALGLVSGMSAAAVLPGPVIPILNQTFLVWQLMFSTLLLRRRYSINQLVGCLLVAVGVVVAITSGSNTGQMLSEVQFFWPALMIISCSFQAWASVMKESIFIDSATQLKHKSLDIFVVNSFGSGFQEPSTGKRTT*

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