SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G24460 | AT | Annotation by Michelle Graham. TAIR10: CRT (chloroquine-resistance transporter)-like transporter 2 | chr4:12642888-12645310 FORWARD LENGTH=431 | SoyBase | E_val: 6.00E-139 | ISS |
| GO:0002229 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to oomycetes | SoyBase | N/A | ISS |
| GO:0034635 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glutathione transport | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009536 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plastid | SoyBase | N/A | ISS |
| KOG3912 | KOG | Predicted integral membrane protein | JGI | ISS | |
| PF08627 | PFAM | CRT-like | JGI | ISS | |
| UniRef100_I1K9T3 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9T3_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q2QQ06 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein n=1 Tax=Oryza sativa Japonica Group RepID=Q2QQ06_ORYSJ | SoyBase | E_val: 6.00E-134 | ISS |
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Glyma06g10350 not represented in the dataset |
Glyma06g10350 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g10451 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g098600 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g10350.2 sequence type=transcript gene model=Glyma06g10350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTGGACTTGGAAGTGATCTAAGTTGGTTGAAAGTGAGAGCAATGTCGTTCGCAGTGGCATTGTGTTCAACGTCGTCGTTCTTCCCTTCAGGTTTCGCAATTCGCAATCCAAAGCAGCTTCAACCTTTCGTTTCAATGTCACTGTCTTCGAAGCTACCGTTGCATTTCTCCGGCAATGCCAGATTCAACCGCAACCACCCAACCATGTTCAAAATTCGAGCCTCAAATTCAAACTCTTCATCTTCATCCAAACTCGTCTTATTTAGCTCCACTATCGTCGTCACAACAGCGGTAGCGAATCGCGTGCTCTACAAATTGGCCCTTGTTCCCATGAAAGAGTACCCCTTTTTTCTCGCTCAGTTCATAACTTTTGGGTATGTTGTTATATATTTCTCGATCTTGTATTTCCGGTACCGGGCGAGAATTGTGACCGATGAGATGCTGGCGATTCCGAAATTGCGCTTTGTGGCCATTGGCTTTCTAGAAGCTTTAGGATTGGTTTCCGGAATGTCCGCTGCAGCTGTACTTCCTGGACCAGTCATACCCATATTGAATCAGACTTTTTTGGTTTGGCAGCTAATGTTTTCTACTCTTCTCTTGAGAAGAAGGTACTCAATCAATCAATTGGTTGGGTGCTTACTTGTAGCTGTTGGTGTTGTGGTGGCTATTACAAGTGGTTCAAATACAGGTCAGATGCTCTCTGAAGTTCAGTTCTTTTGGCCAGCATTGATGATAATCTCATGTTCCTTTCAAGCTTGGGCTTCTGTAATGAAGGAGTCTATTTTCATTGATTCTGCTACTCAATTAAAGCACAAGTCACTGGACATATTTGTGGTTAATTCTTTCGGATCTGGGTTTCAGGAACCAAGCACGGGAAAGAGAACAACCTAGCTTCGAGGGCTAGGAACCTCCATAAGAGAAGAAGGAGAGAGAGAGCGAGAGAGAGACAACTTTTCTGATATTTTTCATTCCTTCTTGCAGAAGGCGATACATACCCTTATATACTCGCTACTAGGGAACAAGTTCCCGACAATAATAACCAAAAAGATAGTGCAATCCTAACAGAATTATTCACCACTACAAAGGCACTACCAGCTACTACGCACTTCATATATGTGGATGCATGCTGCATGGGTCATAGCTAACCATGCTGTACATACTCTGTGTGTTGCTTTCCTTTTGGGTCTCACTCATGCTTTTTGCTTCTTGCAGACCCCTTACTTCCTGTAGTCCCATATTACTATCCCTATCATTCCCGCCCTCATCAAAAACACCTTGTCCTCAAGGTGTTGGGGTTCCACGCATTGCCTCCACAAGTGATACCAGGATCCCAAGGTTTATTTCGGCGAATTGCACCTGGTTTAGTAGTTGTGCATAATGCAACGACCACTGATGGGAGCTTGTATGCGGCCATGGCAGCCCCATAAGGAGGAACAATGGTGAAGAGCTTGTTGAAGGAAATGGTGGTGCGAACGAGACCGGACAGATGAAAAACCAGCATAGGAAGCGGGCCCGGCAAGGTTGTTGGCTGCGGCTGTATGGGTACCAAAGGCGGAAGTGGTGGCGTAGGGGGCAGCGGAGGCATCATGGCTGGTGGAGGTGGCACGGTCGTGGGTGCGGTGAGCCTGGGTGATGGAGTTGGCTTGAGCGGCGGAGGCAACAACGAAGGTGGCGGAGTCTGTGATAGAGGCAGTAACGGTGCAGGACTTGGTTGTATGGGTGCGGAGCATGGAGGCCAAGTCGGTATGGAAAGCGAAGGCGGCGGTGGTGACTGCGCAAAGGAAGAAGATGGAAGGTGGTGGTTGGTTCTCGGAGGCAGTTTAAGGAGAAGGGCGTCCAGTTGGGAGTCGAGGCGGCATGTAGTGGCATCAAGTTTGGCCAAGGCGACCTCAAGGCGGTCCTCAGCAGCCATTGAAGCTTCGTTTGGCGACAAGTAGTGTGGGTGGTGGTAGTGGAAGGTGGAAGCTCCGTACAGCGAGTGGCAGCCATGGAAGCTCCGTATGGCAAGTGGCAGCCATGGAAGCTCCGTTTGGTGGTTGCTGAAATGAAGGAAGGGTTCTCTCGGGATCGAACAAGCTCAGCAAATGTTTGCGGGTACTCTCAAAATCAATCCCAAGGGATTGAGCTGGATGTACAAAGGGAGGAGGGGTGTGCGGCAACGAAGGTGTGTGGAAATGGGTATGGCGGCCATGGACTCTCAACGAGAGCACCAAATGTTAGGAACCAAGCACGAGAAAGAGAACTAGCTTCAAGGGCTAGGAACCTCCATAAGAGAAGAAGGAGAGCGAGAGCGAGAGAGAGAGGCGACTTTTCTGATATTTTTCATTCCTTCTTGCAGAAGGCGATACATACCCTTATATACTCACTACTAGGGAACAAGTTCCCGACAATAATAACCAAAAAGATAGCGCAATCCTAACAGAATTATTCACCACTACAAAGGCACTATCAGCTACTACGCACTTTATATATGTGGATGCATGCTGCATGGGTCATAGCTAACCATGCTGTACATACTCTGTGTGTTGCTTTCCTTTTGGGTCTCACTCACGCTTTTTGCTTCTTGCAGACCCTTACTTCCTGTAGTCCCATATTACTATCCCTATCATTATGACAATAAGCTTTCTAGATTAGCTCATGAAAGATCATGGAAACAGTTTAATCCTATTTTTTCTTCGATTATAAAAACAACTTATACATGAATGTGTACTTAATAATAAATACTTATTCGTTAAATTCTTAATTGAGTTGTTTACTCAAACAGACCTTTAATTGAGGTATGTCAAGC
>Glyma06g10350.1 sequence type=CDS gene model=Glyma06g10350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTGGACTTGGAAGTGATCTAAGTTGGTTGAAAGTGAGAGCAATGTCGTTCGCAGTGGCATTGTGTTCAACGTCGTCGTTCTTCCCTTCAGGTTTCGCAATTCGCAATCCAAAGCAGCTTCAACCTTTCGTTTCAATGTCACTGTCTTCGAAGCTACCGTTGCATTTCTCCGGCAATGCCAGATTCAACCGCAACCACCCAACCATGTTCAAAATTCGAGCCTCAAATTCAAACTCTTCATCTTCATCCAAACTCGTCTTATTTAGCTCCACTATCGTCGTCACAACAGCGGTAGCGAATCGCGTGCTCTACAAATTGGCCCTTGTTCCCATGAAAGAGTACCCCTTTTTTCTCGCTCAGTTCATAACTTTTGGGTATGTTGTTATATATTTCTCGATCTTGTATTTCCGGTACCGGGCGAGAATTGTGACCGATGAGATGCTGGCGATTCCGAAATTGCGCTTTGTGGCCATTGGCTTTCTAGAAGCTTTAGGATTGGTTTCCGGAATGTCCGCTGCAGCTGTACTTCCTGGACCAGTCATACCCATATTGAATCAGACTTTTTTGGTTTGGCAGCTAATGTTTTCTACTCTTCTCTTGAGAAGAAGGTACTCAATCAATCAATTGGTTGGGTGCTTACTTGTAGCTGTTGGTGTTGTGGTGGCTATTACAAGTGGTTCAAATACAGGTCAGATGCTCTCTGAAGTTCAGTTCTTTTGGCCAGCATTGATGATAATCTCATGTTCCTTTCAAGCTTGGGCTTCTGTAATGAAGGAGTCTATTTTCATTGATTCTGCTACTCAATTAAAGCACAAGTCACTGGACATATTTGTGGTTAATTCTTTCGGATCTGGGTTTCAGGCTCTTTTCGTACTTTTGTCTCTACCAATACTTTCTAACTTGAGAGGCATACCATTTGCACAACTTCCTTCGTATTTTAAAAGTGGTGCCGGTTGCTTTCTAAACCTTGGAGCCGATAATCCAAATTGTGATGGTGCCCCCTTGCTTCCACTACTTTACGTAATTATCAACTTGGCATTCAACATATCCCTGCTTAATGCAGTAAAAACTTCGTCTGCAGTTGTGGCTTCCCTTCTGGTAATGTTGTCAGTGCCAATTTCTGTTTATATTCTTTCCCTTCCATTACCATATCTTCCAGAGGGAACAAGCCTGAGCCCATTTTTTTTGCTTGGCTGTGCAATTCTTCTATGTGGTCTTTTTCTGTACAACACAACGAGACCTGTGAGGAGCAGTTCTGAAGATGACTGA >Glyma06g10350.2 sequence type=CDS gene model=Glyma06g10350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high GTTGGACTTGGAAGTGATCTAAGTTGGTTGAAAGTGAGAGCAATGTCGTTCGCAGTGGCATTGTGTTCAACGTCGTCGTTCTTCCCTTCAGGTTTCGCAATTCGCAATCCAAAGCAGCTTCAACCTTTCGTTTCAATGTCACTGTCTTCGAAGCTACCGTTGCATTTCTCCGGCAATGCCAGATTCAACCGCAACCACCCAACCATGTTCAAAATTCGAGCCTCAAATTCAAACTCTTCATCTTCATCCAAACTCGTCTTATTTAGCTCCACTATCGTCGTCACAACAGCGGTAGCGAATCGCGTGCTCTACAAATTGGCCCTTGTTCCCATGAAAGAGTACCCCTTTTTTCTCGCTCAGTTCATAACTTTTGGGTATGTTGTTATATATTTCTCGATCTTGTATTTCCGGTACCGGGCGAGAATTGTGACCGATGAGATGCTGGCGATTCCGAAATTGCGCTTTGTGGCCATTGGCTTTCTAGAAGCTTTAGGATTGGTTTCCGGAATGTCCGCTGCAGCTGTACTTCCTGGACCAGTCATACCCATATTGAATCAGACTTTTTTGGTTTGGCAGCTAATGTTTTCTACTCTTCTCTTGAGAAGAAGGTACTCAATCAATCAATTGGTTGGGTGCTTACTTGTAGCTGTTGGTGTTGTGGTGGCTATTACAAGTGGTTCAAATACAGGTCAGATGCTCTCTGAAGTTCAGTTCTTTTGGCCAGCATTGATGATAATCTCATGTTCCTTTCAAGCTTGGGCTTCTGTAATGAAGGAGTCTATTTTCATTGATTCTGCTACTCAATTAAAGCACAAGTCACTGGACATATTTGTGGTTAATTCTTTCGGATCTGGGTTTCAGGAACCAAGCACGGGAAAGAGAACAACCTAG
>Glyma06g10350.1 sequence type=predicted peptide gene model=Glyma06g10350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high VGLGSDLSWLKVRAMSFAVALCSTSSFFPSGFAIRNPKQLQPFVSMSLSSKLPLHFSGNARFNRNHPTMFKIRASNSNSSSSSKLVLFSSTIVVTTAVANRVLYKLALVPMKEYPFFLAQFITFGYVVIYFSILYFRYRARIVTDEMLAIPKLRFVAIGFLEALGLVSGMSAAAVLPGPVIPILNQTFLVWQLMFSTLLLRRRYSINQLVGCLLVAVGVVVAITSGSNTGQMLSEVQFFWPALMIISCSFQAWASVMKESIFIDSATQLKHKSLDIFVVNSFGSGFQALFVLLSLPILSNLRGIPFAQLPSYFKSGAGCFLNLGADNPNCDGAPLLPLLYVIINLAFNISLLNAVKTSSAVVASLLVMLSVPISVYILSLPLPYLPEGTSLSPFFLLGCAILLCGLFLYNTTRPVRSSSEDD* >Glyma06g10350.2 sequence type=predicted peptide gene model=Glyma06g10350 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high VGLGSDLSWLKVRAMSFAVALCSTSSFFPSGFAIRNPKQLQPFVSMSLSSKLPLHFSGNARFNRNHPTMFKIRASNSNSSSSSKLVLFSSTIVVTTAVANRVLYKLALVPMKEYPFFLAQFITFGYVVIYFSILYFRYRARIVTDEMLAIPKLRFVAIGFLEALGLVSGMSAAAVLPGPVIPILNQTFLVWQLMFSTLLLRRRYSINQLVGCLLVAVGVVVAITSGSNTGQMLSEVQFFWPALMIISCSFQAWASVMKESIFIDSATQLKHKSLDIFVVNSFGSGFQEPSTGKRTT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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