Glyma06g10340 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g10340

Feature Type:	gene_model
Chromosome:	Gm06
Start:	7830567
stop:	7834895
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g10340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G07840	AT	Annotation by Michelle Graham. TAIR10: Sas10/Utp3/C1D family \| chr1:2424603-2426425 FORWARD LENGTH=312	SoyBase	E_val: 8.00E-99	ISS
GO:0006606	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into nucleus	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG3117	KOG	Protein involved in rRNA processing	JGI		ISS
PTHR13237	Panther	SOMETHING ABOUT SILENCING PROTEIN SAS10	JGI		ISS
PF04000	PFAM	Sas10/Utp3/C1D family	JGI		ISS
UniRef100_G7J4I5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Neuroguidin n=1 Tax=Medicago truncatula RepID=G7J4I5_MEDTR	SoyBase	E_val: 4.00E-167	ISS
UniRef100_I1K9T1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9T1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g10340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g10340

Paralog	Evidence	Comments
Glyma04g10420	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g10340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g098500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g10340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g10340

Limit To All Plant Sequences

>Glyma06g10340.2   sequence type=transcript   gene model=Glyma06g10340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTCTATGCCTTTTAGTTAAACTTCAGGCCCCCACTTCAGTTTTCTACTTTTCCTTTCATCCTGAGACCTCCTTGACACTTTCATTTCGTCGCATAACCCTTAAGGCGCCGCACACACCGGCACGGCCTCCCTCCCTCGCGAGTCTCACCGCCATCGTTAATCACGGTTGTCGTCGGAGCTCTCGTAGTTGCTCCTCACAGTCCCAGATTGTCAAAAATTGTGGCAAATCATGGAAAATACTGCGGGCCATAACGATGATAGCAAGCAAAAAGAAGCGCCTAAGCTTGCGGCGTTGTTGAAAGAAATGAAGGAAGGACTTGATACTGTAAGGCGTAAAATTCAATCTTTAACTGCCACGGTGAAAGAAGGCCAATATCCTACAGCAGATGGATTTAGTTATCTTGAAGCTAAAAATTTGCTGCTTTTGAATTATTGTCAATCCCTTGTTTATTATTTATTGCGGAAGGCTAAGGGATTATCAATAGAAGATCATCCTGTTGTTCGAAGTGTTGTAGAGATAAGATTGTTTTTGGAAAAGATTCGGCCAATTGACAAGAAACAACAATACCAGATCCAGAAACTAATACAAGCTAGTGAAAATGCAACCAGAAGTGATATTCAAAACAAGGAGCCAGTTGCATCCAATAAGAGCGAGGACGTGTCAAAGTATCGTCCCAATCCTGACATGCTTGTTAGCAAAGTAGACCTAACCTTGCAGGATGGCAATGAGTATTATCAACCTGTAAAATTTGCGCCTACTTCTATGGATCTAGAGAGATCTTCAAAGTATGAAAGAAATGCCTTGCGAAGAGAAAAAGAAATTCTGAAACAAGCTAAGCAGAGTGATTATATTAGGACATTGATGAATGATATGGAGGAAAAACCTGAAGAGATAAGAGATTTTGAGGGAGCTAGCAGAGAAGTTGATAGATATATTGCCAAGATGGACGAACGTGCTCGGCAAGAGGAGGAGCTGTTCACGCGTGTTCCTCTTACGAAACAGGAGAGGAAACGAGAAAAGTACTTGAAGAAATCAAGAAATGGGTATGGGGAAGTGCTTGGAATGTTTTCCTGATATTTCTAGTCTTAAAATGTATTAAATATGTGATAACATTTTTATTTAAATTAATACTTTTCTTTTTCCACTTAGCATTTGTATTTATTCTATTTCAGGTTGCAAGGTCTAACAGAAAGTTTCTATGATGAAATCAAAACATTACCCTTTGGTGATAAAACTGGAGAGCAAGTAATGGGCTCTAGTAATGGTGGTAGAACAAACAATAGACTGAAGAAGCGAAAGGCATGCACTTTTTATACTTTGAAATTGTTATGTGGAAATTATAAATTACTTATTTGGACTT

Coding sequences of Glyma06g10340

Limit To All Plant Sequences

>Glyma06g10340.1   sequence type=CDS   gene model=Glyma06g10340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAATACTGCGGGCCATAACGATGATAGCAAGCAAAAAGAAGCGCCTAAGCTTGCGGCGTTGTTGAAAGAAATGAAGGAAGGACTTGATACTGTAAGGCGTAAAATTCAATCTTTAACTGCCACGGTGAAAGAAGGCCAATATCCTACAGCAGATGGATTTAGTTATCTTGAAGCTAAAAATTTGCTGCTTTTGAATTATTGTCAATCCCTTGTTTATTATTTATTGCGGAAGGCTAAGGGATTATCAATAGAAGATCATCCTGTTGTTCGAAGTGTTGTAGAGATAAGATTGTTTTTGGAAAAGATTCGGCCAATTGACAAGAAACAACAATACCAGATCCAGAAACTAATACAAGCTAGTGAAAATGCAACCAGAAGTGATATTCAAAACAAGGAGCCAGTTGCATCCAATAAGAGCGAGGACGTGTCAAAGTATCGTCCCAATCCTGACATGCTTGTTAGCAAAGTAGACCTAACCTTGCAGGATGGCAATGAGTATTATCAACCTGTAAAATTTGCGCCTACTTCTATGGATCTAGAGAGATCTTCAAAGTATGAAAGAAATGCCTTGCGAAGAGAAAAAGAAATTCTGAAACAAGCTAAGCAGAGTGATTATATTAGGACATTGATGAATGATATGGAGGAAAAACCTGAAGAGATAAGAGATTTTGAGGGAGCTAGCAGAGAAGTTGATAGATATATTGCCAAGATGGACGAACGTGCTCGGCAAGAGGAGGAGCTGTTCACGCGTGTTCCTCTTACGAAACAGGAGAGGAAACGAGAAAAGTACTTGAAGAAATCAAGAAATGGGTTGCAAGGTCTAACAGAAAGTTTCTATGATGAAATCAAAACATTACCCTTTGGTGATAAAACTGGAGAGCAAGTAATGGGCTCTAGTAATGGTGGTAGAACAAACAATAGACTGAAGAAGCGAAAGAGGAAACATTAA

>Glyma06g10340.2   sequence type=CDS   gene model=Glyma06g10340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAAATACTGCGGGCCATAACGATGATAGCAAGCAAAAAGAAGCGCCTAAGCTTGCGGCGTTGTTGAAAGAAATGAAGGAAGGACTTGATACTGTAAGGCGTAAAATTCAATCTTTAACTGCCACGGTGAAAGAAGGCCAATATCCTACAGCAGATGGATTTAGTTATCTTGAAGCTAAAAATTTGCTGCTTTTGAATTATTGTCAATCCCTTGTTTATTATTTATTGCGGAAGGCTAAGGGATTATCAATAGAAGATCATCCTGTTGTTCGAAGTGTTGTAGAGATAAGATTGTTTTTGGAAAAGATTCGGCCAATTGACAAGAAACAACAATACCAGATCCAGAAACTAATACAAGCTAGTGAAAATGCAACCAGAAGTGATATTCAAAACAAGGAGCCAGTTGCATCCAATAAGAGCGAGGACGTGTCAAAGTATCGTCCCAATCCTGACATGCTTGTTAGCAAAGTAGACCTAACCTTGCAGGATGGCAATGAGTATTATCAACCTGTAAAATTTGCGCCTACTTCTATGGATCTAGAGAGATCTTCAAAGTATGAAAGAAATGCCTTGCGAAGAGAAAAAGAAATTCTGAAACAAGCTAAGCAGAGTGATTATATTAGGACATTGATGAATGATATGGAGGAAAAACCTGAAGAGATAAGAGATTTTGAGGGAGCTAGCAGAGAAGTTGATAGATATATTGCCAAGATGGACGAACGTGCTCGGCAAGAGGAGGAGCTGTTCACGCGTGTTCCTCTTACGAAACAGGAGAGGAAACGAGAAAAGTACTTGAAGAAATCAAGAAATGGGTATGGGGAAGTGCTTGGAATGTTTTCCTGA

Predicted protein sequences of Glyma06g10340

Limit To All Plant Sequences

>Glyma06g10340.1   sequence type=predicted peptide   gene model=Glyma06g10340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENTAGHNDDSKQKEAPKLAALLKEMKEGLDTVRRKIQSLTATVKEGQYPTADGFSYLEAKNLLLLNYCQSLVYYLLRKAKGLSIEDHPVVRSVVEIRLFLEKIRPIDKKQQYQIQKLIQASENATRSDIQNKEPVASNKSEDVSKYRPNPDMLVSKVDLTLQDGNEYYQPVKFAPTSMDLERSSKYERNALRREKEILKQAKQSDYIRTLMNDMEEKPEEIRDFEGASREVDRYIAKMDERARQEEELFTRVPLTKQERKREKYLKKSRNGLQGLTESFYDEIKTLPFGDKTGEQVMGSSNGGRTNNRLKKRKRKH*

>Glyma06g10340.2   sequence type=predicted peptide   gene model=Glyma06g10340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MENTAGHNDDSKQKEAPKLAALLKEMKEGLDTVRRKIQSLTATVKEGQYPTADGFSYLEAKNLLLLNYCQSLVYYLLRKAKGLSIEDHPVVRSVVEIRLFLEKIRPIDKKQQYQIQKLIQASENATRSDIQNKEPVASNKSEDVSKYRPNPDMLVSKVDLTLQDGNEYYQPVKFAPTSMDLERSSKYERNALRREKEILKQAKQSDYIRTLMNDMEEKPEEIRDFEGASREVDRYIAKMDERARQEEELFTRVPLTKQERKREKYLKKSRNGYGEVLGMFS*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain