SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
|
A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G07840 | AT | Annotation by Michelle Graham. TAIR10: Sas10/Utp3/C1D family | chr1:2424603-2426425 FORWARD LENGTH=312 | SoyBase | E_val: 8.00E-99 | ISS |
| GO:0006606 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein import into nucleus | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG3117 | KOG | Protein involved in rRNA processing | JGI | ISS | |
| PTHR13237 | Panther | SOMETHING ABOUT SILENCING PROTEIN SAS10 | JGI | ISS | |
| PF04000 | PFAM | Sas10/Utp3/C1D family | JGI | ISS | |
| UniRef100_G7J4I5 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Neuroguidin n=1 Tax=Medicago truncatula RepID=G7J4I5_MEDTR | SoyBase | E_val: 4.00E-167 | ISS |
| UniRef100_I1K9T1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9T1_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma06g10340 not represented in the dataset |
Glyma06g10340 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g10420 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g098500 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g10340.2 sequence type=transcript gene model=Glyma06g10340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high TTTCTATGCCTTTTAGTTAAACTTCAGGCCCCCACTTCAGTTTTCTACTTTTCCTTTCATCCTGAGACCTCCTTGACACTTTCATTTCGTCGCATAACCCTTAAGGCGCCGCACACACCGGCACGGCCTCCCTCCCTCGCGAGTCTCACCGCCATCGTTAATCACGGTTGTCGTCGGAGCTCTCGTAGTTGCTCCTCACAGTCCCAGATTGTCAAAAATTGTGGCAAATCATGGAAAATACTGCGGGCCATAACGATGATAGCAAGCAAAAAGAAGCGCCTAAGCTTGCGGCGTTGTTGAAAGAAATGAAGGAAGGACTTGATACTGTAAGGCGTAAAATTCAATCTTTAACTGCCACGGTGAAAGAAGGCCAATATCCTACAGCAGATGGATTTAGTTATCTTGAAGCTAAAAATTTGCTGCTTTTGAATTATTGTCAATCCCTTGTTTATTATTTATTGCGGAAGGCTAAGGGATTATCAATAGAAGATCATCCTGTTGTTCGAAGTGTTGTAGAGATAAGATTGTTTTTGGAAAAGATTCGGCCAATTGACAAGAAACAACAATACCAGATCCAGAAACTAATACAAGCTAGTGAAAATGCAACCAGAAGTGATATTCAAAACAAGGAGCCAGTTGCATCCAATAAGAGCGAGGACGTGTCAAAGTATCGTCCCAATCCTGACATGCTTGTTAGCAAAGTAGACCTAACCTTGCAGGATGGCAATGAGTATTATCAACCTGTAAAATTTGCGCCTACTTCTATGGATCTAGAGAGATCTTCAAAGTATGAAAGAAATGCCTTGCGAAGAGAAAAAGAAATTCTGAAACAAGCTAAGCAGAGTGATTATATTAGGACATTGATGAATGATATGGAGGAAAAACCTGAAGAGATAAGAGATTTTGAGGGAGCTAGCAGAGAAGTTGATAGATATATTGCCAAGATGGACGAACGTGCTCGGCAAGAGGAGGAGCTGTTCACGCGTGTTCCTCTTACGAAACAGGAGAGGAAACGAGAAAAGTACTTGAAGAAATCAAGAAATGGGTATGGGGAAGTGCTTGGAATGTTTTCCTGATATTTCTAGTCTTAAAATGTATTAAATATGTGATAACATTTTTATTTAAATTAATACTTTTCTTTTTCCACTTAGCATTTGTATTTATTCTATTTCAGGTTGCAAGGTCTAACAGAAAGTTTCTATGATGAAATCAAAACATTACCCTTTGGTGATAAAACTGGAGAGCAAGTAATGGGCTCTAGTAATGGTGGTAGAACAAACAATAGACTGAAGAAGCGAAAGGCATGCACTTTTTATACTTTGAAATTGTTATGTGGAAATTATAAATTACTTATTTGGACTT
>Glyma06g10340.1 sequence type=CDS gene model=Glyma06g10340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAAATACTGCGGGCCATAACGATGATAGCAAGCAAAAAGAAGCGCCTAAGCTTGCGGCGTTGTTGAAAGAAATGAAGGAAGGACTTGATACTGTAAGGCGTAAAATTCAATCTTTAACTGCCACGGTGAAAGAAGGCCAATATCCTACAGCAGATGGATTTAGTTATCTTGAAGCTAAAAATTTGCTGCTTTTGAATTATTGTCAATCCCTTGTTTATTATTTATTGCGGAAGGCTAAGGGATTATCAATAGAAGATCATCCTGTTGTTCGAAGTGTTGTAGAGATAAGATTGTTTTTGGAAAAGATTCGGCCAATTGACAAGAAACAACAATACCAGATCCAGAAACTAATACAAGCTAGTGAAAATGCAACCAGAAGTGATATTCAAAACAAGGAGCCAGTTGCATCCAATAAGAGCGAGGACGTGTCAAAGTATCGTCCCAATCCTGACATGCTTGTTAGCAAAGTAGACCTAACCTTGCAGGATGGCAATGAGTATTATCAACCTGTAAAATTTGCGCCTACTTCTATGGATCTAGAGAGATCTTCAAAGTATGAAAGAAATGCCTTGCGAAGAGAAAAAGAAATTCTGAAACAAGCTAAGCAGAGTGATTATATTAGGACATTGATGAATGATATGGAGGAAAAACCTGAAGAGATAAGAGATTTTGAGGGAGCTAGCAGAGAAGTTGATAGATATATTGCCAAGATGGACGAACGTGCTCGGCAAGAGGAGGAGCTGTTCACGCGTGTTCCTCTTACGAAACAGGAGAGGAAACGAGAAAAGTACTTGAAGAAATCAAGAAATGGGTTGCAAGGTCTAACAGAAAGTTTCTATGATGAAATCAAAACATTACCCTTTGGTGATAAAACTGGAGAGCAAGTAATGGGCTCTAGTAATGGTGGTAGAACAAACAATAGACTGAAGAAGCGAAAGAGGAAACATTAA >Glyma06g10340.2 sequence type=CDS gene model=Glyma06g10340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAAAATACTGCGGGCCATAACGATGATAGCAAGCAAAAAGAAGCGCCTAAGCTTGCGGCGTTGTTGAAAGAAATGAAGGAAGGACTTGATACTGTAAGGCGTAAAATTCAATCTTTAACTGCCACGGTGAAAGAAGGCCAATATCCTACAGCAGATGGATTTAGTTATCTTGAAGCTAAAAATTTGCTGCTTTTGAATTATTGTCAATCCCTTGTTTATTATTTATTGCGGAAGGCTAAGGGATTATCAATAGAAGATCATCCTGTTGTTCGAAGTGTTGTAGAGATAAGATTGTTTTTGGAAAAGATTCGGCCAATTGACAAGAAACAACAATACCAGATCCAGAAACTAATACAAGCTAGTGAAAATGCAACCAGAAGTGATATTCAAAACAAGGAGCCAGTTGCATCCAATAAGAGCGAGGACGTGTCAAAGTATCGTCCCAATCCTGACATGCTTGTTAGCAAAGTAGACCTAACCTTGCAGGATGGCAATGAGTATTATCAACCTGTAAAATTTGCGCCTACTTCTATGGATCTAGAGAGATCTTCAAAGTATGAAAGAAATGCCTTGCGAAGAGAAAAAGAAATTCTGAAACAAGCTAAGCAGAGTGATTATATTAGGACATTGATGAATGATATGGAGGAAAAACCTGAAGAGATAAGAGATTTTGAGGGAGCTAGCAGAGAAGTTGATAGATATATTGCCAAGATGGACGAACGTGCTCGGCAAGAGGAGGAGCTGTTCACGCGTGTTCCTCTTACGAAACAGGAGAGGAAACGAGAAAAGTACTTGAAGAAATCAAGAAATGGGTATGGGGAAGTGCTTGGAATGTTTTCCTGA
>Glyma06g10340.1 sequence type=predicted peptide gene model=Glyma06g10340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MENTAGHNDDSKQKEAPKLAALLKEMKEGLDTVRRKIQSLTATVKEGQYPTADGFSYLEAKNLLLLNYCQSLVYYLLRKAKGLSIEDHPVVRSVVEIRLFLEKIRPIDKKQQYQIQKLIQASENATRSDIQNKEPVASNKSEDVSKYRPNPDMLVSKVDLTLQDGNEYYQPVKFAPTSMDLERSSKYERNALRREKEILKQAKQSDYIRTLMNDMEEKPEEIRDFEGASREVDRYIAKMDERARQEEELFTRVPLTKQERKREKYLKKSRNGLQGLTESFYDEIKTLPFGDKTGEQVMGSSNGGRTNNRLKKRKRKH* >Glyma06g10340.2 sequence type=predicted peptide gene model=Glyma06g10340 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MENTAGHNDDSKQKEAPKLAALLKEMKEGLDTVRRKIQSLTATVKEGQYPTADGFSYLEAKNLLLLNYCQSLVYYLLRKAKGLSIEDHPVVRSVVEIRLFLEKIRPIDKKQQYQIQKLIQASENATRSDIQNKEPVASNKSEDVSKYRPNPDMLVSKVDLTLQDGNEYYQPVKFAPTSMDLERSSKYERNALRREKEILKQAKQSDYIRTLMNDMEEKPEEIRDFEGASREVDRYIAKMDERARQEEELFTRVPLTKQERKREKYLKKSRNGYGEVLGMFS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
|
|
|
