Report for Sequence Feature Glyma06g10280
Feature Type: gene_model
Chromosome: Gm06
Start: 7764041
stop: 7769818
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g10280
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G24470 AT
Annotation by Michelle Graham. TAIR10: GATA-type zinc finger protein with TIFY domain | chr4:12645785-12647734 FORWARD LENGTH=309
SoyBase E_val: 1.00E-86 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0007623 GO-bp
Annotation by Michelle Graham. GO Biological Process: circadian rhythm
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0008270 GO-mf
Annotation by Michelle Graham. GO Molecular Function: zinc ion binding
SoyBase N/A ISS
GO:0043565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding
SoyBase N/A ISS
PF00320 PFAM
GATA zinc finger
JGI ISS
PF06200 PFAM
tify domain
JGI ISS
PF06203 PFAM
CCT motif
JGI ISS
UniRef100_G7J4K3 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: GATA transcription factor n=1 Tax=Medicago truncatula RepID=G7J4K3_MEDTR
SoyBase E_val: 7.00E-105 ISS
UniRef100_I1K9S5 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9S5_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g10280
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma06g10280
Paralog Evidence Comments
Glyma04g10330 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g10280 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g097900 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g10280
Coding sequences of Glyma06g10280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g10280.1 sequence type=CDS gene model=Glyma06g10280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTTCGGCTCCATGAACAAGATCGTCTCCGCTGAAGACACCGACGGCTCCGTCTCCGACCACCACATCCATTACAGTTCCCACACCATCGAAGACGACGGCGCCGCCTCCGATCACCACATCCATTACAGTTCCCACACCATCGAAGAGGACGGCGCCGTCTCCAACCACCACATCCATTACAGTTCCCACACCATCGAAGAAGACGGCGGCGCCACTGTCGAAGAGGTTTCCGCCGTTCCGCCCCTTGAAATCTCTATCAACGATTCTAGCCAGCTCACGATCTCGTTTCGCGGCCAAGTCTATGTCTTCGACGCTGTTACACCTGATAAGGTTCAAGCAGTGTTGTTGCTGTTGGGAGGAAATGAACTAACTTCGGGTTCGCAATGTGCGGAGCTATCATCTCAAAATCAGACTGGTGAGGAGGAATATCCTGCAAAATGTAGTCTACCACAGCGAGCAGCGTCATTGAATAGGTTTCGTCAGAAGAGGAAAGAGCGGTGCTTTGATAAGAAAGTTAGATATAGTGTACGTCAAGAAGTTGCACTCAGGATGCATCGTAATAAGGGTCAATTTACTTCATCAAAGAATCAGGATGGAACTAATAGTTGGGGTTCAGATCAAGAGTCAGGGCAGGATGCTGTTCAATCTGAAACCTTGTGCACACATTGTGGAATAAGTTCAAAATCCACTCCAATGATGCGTAGGGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTTTTTTGGGCAAATAGGGGCACTTTGAGGGATCTTTCTAAGAGAAACCAGGAACACTCTCTTGCACCACCTGAGCAGGTTGATGAGGGCAGTAATAATAATGACTTTGACTGTCGGAGTGGCATCCCTGCACAACATAACAATCTTGTTAATGATAACAAAGCTTAA
Predicted protein sequences of Glyma06g10280
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g10280.1 sequence type=predicted peptide gene model=Glyma06g10280 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MFGSMNKIVSAEDTDGSVSDHHIHYSSHTIEDDGAASDHHIHYSSHTIEEDGAVSNHHIHYSSHTIEEDGGATVEEVSAVPPLEISINDSSQLTISFRGQVYVFDAVTPDKVQAVLLLLGGNELTSGSQCAELSSQNQTGEEEYPAKCSLPQRAASLNRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKNQDGTNSWGSDQESGQDAVQSETLCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDLSKRNQEHSLAPPEQVDEGSNNNDFDCRSGIPAQHNNLVNDNKA*