Report for Sequence Feature Glyma06g10210
Feature Type: gene_model
Chromosome: Gm06
Start: 7699547
stop: 7704964
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g10210
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT4G24490 AT
Annotation by Michelle Graham. TAIR10: RAB geranylgeranyl transferase alpha subunit 1 | chr4:12655330-12658103 REVERSE LENGTH=678
SoyBase E_val: 0 ISS
GO:0018342 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein prenylation
SoyBase N/A ISS
GO:0046686 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cadmium ion
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0008318 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein prenyltransferase activity
SoyBase N/A ISS
KOG0529
KOG
Protein geranylgeranyltransferase type II, alpha subunit
JGI ISS
PTHR11129 Panther
PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT
JGI ISS
PTHR11129:SF2 Panther
PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT
JGI ISS
PF01239 PFAM
Protein prenyltransferase alpha subunit repeat
JGI ISS
UniRef100_G7J4K8 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Geranylgeranyl transferase type-2 subunit alpha n=1 Tax=Medicago truncatula RepID=G7J4K8_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1K9S0 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9S0_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g10210
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g10210
Paralog Evidence Comments
Glyma04g10240 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g10210 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g097500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g10210
Coding sequences of Glyma06g10210
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g10210.1 sequence type=CDS gene model=Glyma06g10210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGCACGGTCGGCCTCGCAAAGCGTTGAAGCAAGAAGATGAAGCCGCTTCAGCAGCCAAAACTGAGAAGCTTCGTTCTGTACAAGCTCAGTTCCTCGCCAATCACCACAATCACATATATAGCAAGGAAGCGCTAGATTTGAGCGCGAAGCTTCTAGAAGTGAATCCAGAGTGCTACACAGCTTGGAATTACAGAAAGCTCGCCGTTCAACATTTTCTCTCTAACTCCGATTCCGATCCCCACTCTATCTTCGATGACGAGCTCAAACTCGTGGAGAATGCGTTGAGGAAGAATTTCAAGTCTTACGGCGCGTGGCATCATAGAAAATGGGTACTCAACAAGGGGCATTCGTCCATAGACAACGAAATGCGCCTTCTGAATGGTTTTCAGAAGATGGATCCTCGGAATTTTCATGCCTGGAATTACCGAAGGTTTGTTGCTGAACTGATGAAACGATCAGATGAGGATGAGCTGAAATACACAGAGGAAGTGATAGCGACTAATTTCAGTAATTACTCTGCATGGCACAATCGTAGTGTGCTTTTGTCTAATTTGCTGAAAAGAAAGGCTGAAGGATATTTCCCTAAAGAAAAAGTTTTGGAAGAGGAGTTTGAGCATGTCCACAATGCTATTTTTACCGATCCAGATGATCAGAGTGGCTGGTTTTATCATCTTTGGCTCATTCAACAAACAGTGAAAATTGATGCTCCTCTACTTGTTTCATCTTGGCCTTCCCATGGATCTAATATAACTCTAATTGGGGACAATGATCTTCGTGGTTGTGGTTTGTCTCTTCTGAATGGTACACTATCAAACCCTGGAACACTTCCAATCATTCTTTATTTCAATCAAGCCGTAGAAGGAATAAACTCATCCACAGTGGCTATTAAATCTGAACTTTTAAAGGAGGAACTTATTTGGAAACCACTTTCAATGAACAATTCAAATACTGCTCAGTTTTGGGTTGTATATCTAAACCTTGGAAATTTTGAGCTTCAACCGTCAAAAACTTACTCTGTAGAGATCAACATTGGACATTCTAAGGGTATTATATCTTCAAATGGAAATCACTTTGATGATCCTTCCCAAATTTCCTGTAAAGTGTTTGTGCAGACTGCATCTAGTGAACCTACTGAAGGACAGGGTGGGAAAAGGACTACATGGAAGGATACAAATTTCCAAAAAATTGACCATTTTCAGGAATCAGATTCCATTCTTCCTGCTGATCAAAATCACCATATTCCAACAACTTCCAATTGGTGCACTGAGGAAATTGGTGAAGAAATAACTAAAGTTCGGGACTTATTGTCCGAGTATGACTGTAAAATTGGTAAGCTTACACTAGCAAGACTTTTGAGTGCTCTTGATTCGTTATCATTTCAATATGATGGAAGAAAATCTAACACTGAAGAAGTTCTTCAACTTTACACTGATCTGATGAAGTTGGATCCAACACATTATCTATACTACAAAGATGAGCATAGTCTAATATCACTAAAGCGGATAACTTCAACTAGGGATTCTTTACTACCATACTGCCACTACTATAAAGATGCAACAGAAACAATCACTGGTTATGTCTGTCTACGATTACGAAATCTATCATTGTCACGGATGGGATCCATTGAGAATTTATTGTGGGTGCAAATGCTAGACCTTAGCCACAACGAACTTCAATCCGTTGAAGGGTTGGAGGCCATGCAACTTCTATCTTGCTTAAACCTGAGTCATAATAAATTTGGTAGTTTTACTGCTTTGGAGCCTGTCAGATTGCTTAAGTCACTTAAAGTGCTGAATATCTCATACAATGAGTTAGGCTCTCACTCGATTGACACCACGAGATACTTATGCTCTTCTCCTGTATCACATGCTGAAGAATTTGCCTGGGACCGTTTTGAACTCCTCACTGACAGCATTAATGCCACAAAATTTTGGGAAGCTTTCTTGATATTTGGAAGCTTGACATTGACAGAGTTAAACATAACAGGGAATGCAGTAGCTGATGAGAACTTCAGGTCATTTCTTGTCAAAGTTTTGCCAACACTCAAGTGGCTAGATGATGAAGAATTATCTTGA
Predicted protein sequences of Glyma06g10210
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g10210.1 sequence type=predicted peptide gene model=Glyma06g10210 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MHGRPRKALKQEDEAASAAKTEKLRSVQAQFLANHHNHIYSKEALDLSAKLLEVNPECYTAWNYRKLAVQHFLSNSDSDPHSIFDDELKLVENALRKNFKSYGAWHHRKWVLNKGHSSIDNEMRLLNGFQKMDPRNFHAWNYRRFVAELMKRSDEDELKYTEEVIATNFSNYSAWHNRSVLLSNLLKRKAEGYFPKEKVLEEEFEHVHNAIFTDPDDQSGWFYHLWLIQQTVKIDAPLLVSSWPSHGSNITLIGDNDLRGCGLSLLNGTLSNPGTLPIILYFNQAVEGINSSTVAIKSELLKEELIWKPLSMNNSNTAQFWVVYLNLGNFELQPSKTYSVEINIGHSKGIISSNGNHFDDPSQISCKVFVQTASSEPTEGQGGKRTTWKDTNFQKIDHFQESDSILPADQNHHIPTTSNWCTEEIGEEITKVRDLLSEYDCKIGKLTLARLLSALDSLSFQYDGRKSNTEEVLQLYTDLMKLDPTHYLYYKDEHSLISLKRITSTRDSLLPYCHYYKDATETITGYVCLRLRNLSLSRMGSIENLLWVQMLDLSHNELQSVEGLEAMQLLSCLNLSHNKFGSFTALEPVRLLKSLKVLNISYNELGSHSIDTTRYLCSSPVSHAEEFAWDRFELLTDSINATKFWEAFLIFGSLTLTELNITGNAVADENFRSFLVKVLPTLKWLDDEELS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
