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Report for Sequence Feature Glyma06g10200

Feature Type:gene_model
Chromosome:Gm06
Start:7694883
stop:7698560
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g10200
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G09700AT Annotation by Michelle Graham. TAIR10: dsRNA-binding domain-like superfamily protein | chr1:3137960-3140118 REVERSE LENGTH=419 SoyBaseE_val: 1.00E-83ISS
GO:0009733GO-bp Annotation by Michelle Graham. GO Biological Process: response to auxin stimulus SoyBaseN/AISS
GO:0009735GO-bp Annotation by Michelle Graham. GO Biological Process: response to cytokinin stimulus SoyBaseN/AISS
GO:0009737GO-bp Annotation by Michelle Graham. GO Biological Process: response to abscisic acid stimulus SoyBaseN/AISS
GO:0010267GO-bp Annotation by Michelle Graham. GO Biological Process: production of ta-siRNAs involved in RNA interference SoyBaseN/AISS
GO:0010305GO-bp Annotation by Michelle Graham. GO Biological Process: leaf vascular tissue pattern formation SoyBaseN/AISS
GO:0010589GO-bp Annotation by Michelle Graham. GO Biological Process: leaf proximal/distal pattern formation SoyBaseN/AISS
GO:0031054GO-bp Annotation by Michelle Graham. GO Biological Process: pre-miRNA processing SoyBaseN/AISS
GO:0035196GO-bp Annotation by Michelle Graham. GO Biological Process: production of miRNAs involved in gene silencing by miRNA SoyBaseN/AISS
GO:0035279GO-bp Annotation by Michelle Graham. GO Biological Process: mRNA cleavage involved in gene silencing by miRNA SoyBaseN/AISS
GO:0051607GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to virus SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0010445GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nuclear dicing body SoyBaseN/AISS
GO:0003723GO-mf Annotation by Michelle Graham. GO Molecular Function: RNA binding SoyBaseN/AISS
GO:0003725GO-mf Annotation by Michelle Graham. GO Molecular Function: double-stranded RNA binding SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0035198GO-mf Annotation by Michelle Graham. GO Molecular Function: miRNA binding SoyBaseN/AISS
PTHR11207Panther RIBONUCLEASE III JGI ISS
PF00035PFAM Double-stranded RNA binding motif JGI ISS
UniRef100_G7J4K9UniRef Annotation by Michelle Graham. Most informative UniRef hit: DsRNA-binding protein n=1 Tax=Medicago truncatula RepID=G7J4K9_MEDTR SoyBaseE_val: 1.00E-137ISS
UniRef100_I1K9R8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9R8_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g10200
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g10200
ParalogEvidenceComments
Glyma04g10230 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g10200 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g097400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g10200
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma06g10200
>Glyma06g10200.2   sequence type=transcript   gene model=Glyma06g10200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CCCACCCGAAAGAAACGCGTCCCATCCACTTTAAATAGAACGAACGAGAGCGGCGCAGATTCCGGCATTGCTTCCACAGTAGTACACGCCAACTCTCTCTTCTCTTCTCACACCGTATAAAAACTCATTCACACCATCAATCAAATACACCGAACTAGTTTAATAAGTCTCAGAAACACTCACTCACTCGATTCTTCTCAAACCGTCACCGTCGAGGCTATGCCCACCAACGAAGACTTCCAGAGTGTTTCAAATTGCTATGTGTTCAAGAGCCGATTGCAGGAGTATGCACAGAAGGCGGGGCTGCCCACGCCTGTCTATGAAACTATTAAGGAAGGGCCTTCCCATGAACCTTCTTTCAGGTCAACAGTGATAGTGAACGACGTTCGGTATGATTCTTTGCCTGGATTTTTCAACCGCAAGGCAGCAGAGCAGTCGGCCGCCGAAGTTGCTTTGGTGGAGTTGATCAAATCTAATTTAGTTAATCAATCCATCACTCAACCTGTTCATGAAACAGGATTATGCAAGAATTTACTTCAGGAATATGCTCAGAAAATGAACTATGCAATGCCTATGTATCAGTGCAAGAAGGATGAAACACCAGGCCGAGCATCAGTATTTTCATGTACGGTTGACATTGGGGGGATTCTATATATTGGGGGAGCAGCAAAAACAAAGAAGGAAGCAGAGATAAAAGCTGCCAGAACTGCTTTATTAGCTATCCAGTCAAGTGCATCGCAAGCTTCCCAAGACCAGGTTGGCCATCCACAGTTGACAGTCCTTCCATGCAGAAAAAGGGCAACAGAATCTGTTGCCATAGCTGATGAGAATTCAAATCCCCCAAAGCCTAAGAAAGCGCGGTTTAAGAGGAAGTCTTCCAAGAGGAAACCCTCTAGAGACAAGATGGGCCAAATTCATACTGAAAACTTGGGCATTGGAGCAAATATCAATCATGAGGTAGAAACACATGCAAGTGTTAATGGTGAATCTGGCGTCCTTGAAAAGAAATCCGAAACATTCACTTCAGAAGCCGCCAACAATTTTGAGAATGGAGTATCAGTTAATTATCAAGAGAAAGAAACATTGGCTGGGGAGAGTTCTCTTGCTGTCAATAGCCAGGAAGGAATTTTTGAGAATGGGAAGTCAACAGAATTATATTCCAAGGAGAACAATCTTGTGACTGTTGTTACAGAACTATCTTCTGTGTCAAATGGAGGCATACCGGAAACAGGTGTGGAGGTGAACAAACAGCAATACAATGGAGAAATGGTTTCTGACCATTGTGTTGTGGGGGGTTGAGGCTTATTGAATTATTTAAATTGGAAGGTAAGATTCAAGCAATGGCAGTCATTTATTAGTGTTAGGAACCTTGAGGCTTCCAACTGTTTTTCTTTGTTGGGTGTCACTCAATTAGGAAAGTAAAATACAGGATGTGATGATTCTCATAGCATGTTGATAATTTTTATCGTTTAACTGATGAGGGTGTTTTAACACCATTTATTTATGTTGTATTAGTATATTTGAGTTATCTGCTCCATTTGTCCGCGACATGGGACATGGATTTGGACGGGTTTGAGTTTATATTAAAAACGCTGTTTCCTTTCAGAGTTTAACTTTACATTTGAAACGTGTTTAATAAGAATCAATGCATGTAT
Coding sequences of Glyma06g10200
>Glyma06g10200.1   sequence type=CDS   gene model=Glyma06g10200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCACCAACGAAGACTTCCAGAGTGTTTCAAATTGCTATGTGTTCAAGAGCCGATTGCAGGAGTATGCACAGAAGGCGGGGCTGCCCACGCCTGTCTATGAAACTATTAAGGAAGGGCCTTCCCATGAACCTTCTTTCAGGTCAACAGTGATAGTGAACGACGTTCGGTATGATTCTTTGCCTGGATTTTTCAACCGCAAGGCAGCAGAGCAGTCGGCCGCCGAAGTTGCTTTGGTGGAGTTGATCAAATCTAATTTAGTTAATCAATCCATCACTCAACCTGTTTGTTTCTTCCAGCATGAAACAGGATTATGCAAGAATTTACTTCAGGAATATGCTCAGAAAATGAACTATGCAATGCCTATGTATCAGTGCAAGAAGGATGAAACACCAGGCCGAGCATCAGTATTTTCATGTACGGTTGACATTGGGGGGATTCTATATATTGGGGGAGCAGCAAAAACAAAGAAGGAAGCAGAGATAAAAGCTGCCAGAACTGCTTTATTAGCTATCCAGTCAAGTGCATCGCAAGCTTCCCAAGACCAGGTTGGCCATCCACAGTTGACAGTCCTTCCATGCAGAAAAAGGGCAACAGAATCTGTTGCCATAGCTGATGAGAATTCAAATCCCCCAAAGCCTAAGAAAGCGCGGTTTAAGAGGAAGTCTTCCAAGAGGAAACCCTCTAGAGACAAGATGGGCCAAATTCATACTGAAAACTTGGGCATTGGAGCAAATATCAATCATGAGGTAGAAACACATGCAAGTGTTAATGGTGAATCTGGCGTCCTTGAAAAGAAATCCGAAACATTCACTTCAGAAGCCGCCAACAATTTTGAGAATGGAGTATCAGTTAATTATCAAGAGAAAGAAACATTGGCTGGGGAGAGTTCTCTTGCTGTCAATAGCCAGGAAGGAATTTTTGAGAATGGGAAGTCAACAGAATTATATTCCAAGGAGAACAATCTTGTGACTGTTGTTACAGAACTATCTTCTGTGTCAAATGGAGGCATACCGGAAACAGGTGTGGAGGTGAACAAACAGCAATACAATGGAGAAATGGTTTCTGACCATTGTGTTGTGGGGGGTTGA

>Glyma06g10200.2   sequence type=CDS   gene model=Glyma06g10200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCACCAACGAAGACTTCCAGAGTGTTTCAAATTGCTATGTGTTCAAGAGCCGATTGCAGGAGTATGCACAGAAGGCGGGGCTGCCCACGCCTGTCTATGAAACTATTAAGGAAGGGCCTTCCCATGAACCTTCTTTCAGGTCAACAGTGATAGTGAACGACGTTCGGTATGATTCTTTGCCTGGATTTTTCAACCGCAAGGCAGCAGAGCAGTCGGCCGCCGAAGTTGCTTTGGTGGAGTTGATCAAATCTAATTTAGTTAATCAATCCATCACTCAACCTGTTCATGAAACAGGATTATGCAAGAATTTACTTCAGGAATATGCTCAGAAAATGAACTATGCAATGCCTATGTATCAGTGCAAGAAGGATGAAACACCAGGCCGAGCATCAGTATTTTCATGTACGGTTGACATTGGGGGGATTCTATATATTGGGGGAGCAGCAAAAACAAAGAAGGAAGCAGAGATAAAAGCTGCCAGAACTGCTTTATTAGCTATCCAGTCAAGTGCATCGCAAGCTTCCCAAGACCAGGTTGGCCATCCACAGTTGACAGTCCTTCCATGCAGAAAAAGGGCAACAGAATCTGTTGCCATAGCTGATGAGAATTCAAATCCCCCAAAGCCTAAGAAAGCGCGGTTTAAGAGGAAGTCTTCCAAGAGGAAACCCTCTAGAGACAAGATGGGCCAAATTCATACTGAAAACTTGGGCATTGGAGCAAATATCAATCATGAGGTAGAAACACATGCAAGTGTTAATGGTGAATCTGGCGTCCTTGAAAAGAAATCCGAAACATTCACTTCAGAAGCCGCCAACAATTTTGAGAATGGAGTATCAGTTAATTATCAAGAGAAAGAAACATTGGCTGGGGAGAGTTCTCTTGCTGTCAATAGCCAGGAAGGAATTTTTGAGAATGGGAAGTCAACAGAATTATATTCCAAGGAGAACAATCTTGTGACTGTTGTTACAGAACTATCTTCTGTGTCAAATGGAGGCATACCGGAAACAGGTGTGGAGGTGAACAAACAGCAATACAATGGAGAAATGGTTTCTGACCATTGTGTTGTGGGGGGTTGA
Predicted protein sequences of Glyma06g10200
>Glyma06g10200.1   sequence type=predicted peptide   gene model=Glyma06g10200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPTNEDFQSVSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSAAEVALVELIKSNLVNQSITQPVCFFQHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASVFSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSASQASQDQVGHPQLTVLPCRKRATESVAIADENSNPPKPKKARFKRKSSKRKPSRDKMGQIHTENLGIGANINHEVETHASVNGESGVLEKKSETFTSEAANNFENGVSVNYQEKETLAGESSLAVNSQEGIFENGKSTELYSKENNLVTVVTELSSVSNGGIPETGVEVNKQQYNGEMVSDHCVVGG*

>Glyma06g10200.2   sequence type=predicted peptide   gene model=Glyma06g10200   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPTNEDFQSVSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVNDVRYDSLPGFFNRKAAEQSAAEVALVELIKSNLVNQSITQPVHETGLCKNLLQEYAQKMNYAMPMYQCKKDETPGRASVFSCTVDIGGILYIGGAAKTKKEAEIKAARTALLAIQSSASQASQDQVGHPQLTVLPCRKRATESVAIADENSNPPKPKKARFKRKSSKRKPSRDKMGQIHTENLGIGANINHEVETHASVNGESGVLEKKSETFTSEAANNFENGVSVNYQEKETLAGESSLAVNSQEGIFENGKSTELYSKENNLVTVVTELSSVSNGGIPETGVEVNKQQYNGEMVSDHCVVGG*






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