Glyma06g10170 - SoyBase

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Report for Sequence Feature Glyma06g10170

Feature Type:	gene_model
Chromosome:	Gm06
Start:	7655267
stop:	7665715
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g10170

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G09710	AT	Annotation by Michelle Graham. TAIR10: Homeodomain-like superfamily protein \| chr1:3141119-3144232 FORWARD LENGTH=610	SoyBase	E_val: 4.00E-74	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
PF00249	PFAM	Myb-like DNA-binding domain	JGI		ISS
UniRef100_G7J526	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Telomeric repeat-binding factor n=1 Tax=Medicago truncatula RepID=G7J526_MEDTR	SoyBase	E_val: 7.00E-150	ISS
UniRef100_UPI000233A61D	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A61D related cluster n=1 Tax=unknown RepID=UPI000233A61D	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g10170

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g10170

Paralog	Evidence	Comments
Glyma04g10185	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g10170 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g097100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g10170

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g10170

Limit To All Plant Sequences

>Glyma06g10170.1   sequence type=CDS   gene model=Glyma06g10170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCGGAGAAGAAGAGCAAGAAAGTCTCCTTCACCGAAGAAGATGCTGTGACATTCATACAGAGGTACGACGCAACTACGGTGCTCACTTTACTTCAGGAAGTGGCGCATTACTCTCAACCGAAGATTGATTGGTTCGAGTTGGTGGAGAAAAGTGCGACTGGGATTTCTAACGCCAGGGAGTATCAAATGCTATGGCGGCACTTGGCGTATCGCCATTCTTTGCCTGAAAACTTCGAAGATGGGGCTGAACCTTTGGATGACGATAGTGACCTAGAGTGTGAGCTAGAAGCATTACCCCCTGTAAGTTTGGAATGTGCATCAGAGGCTGCTGCATGTGTGAAGGTAATGATTGCTTCTCGTACACTGAGTGAATCTGCCCCTAGTAGCTCAACAATCGAGGCTCCATTGACTATAAATGTTCCAGTTTGCCATTCATCTAGAACTCGTATTGAAAATTCACAACCCTCTAATTTGATGCAAGGGACAAGCTTTATTTTTCCAGTTACCGTTCAGAGACAGACACTGCCAACTATATCATCGACAGATGGTATAGAAACCAAGGGAATAGTTGGTGGTAATATGGCTTCCAAAAGAAAAAGAAAGGCATGGTCAGAAGAAGAGGACATGCAGCTACGAGCTGCTGTTCAAAGATGGGGCGAAGGGAATTGGGCAACCATGGCAAAAGGAGACGACTTTCCTATTAAGAGAAGTGCTACACAGTTGGCCCAGAGGTGGAGCATTTTAAGAAAGAAAGATGGTTGTACAAATACAGGAACTGTAACCAGCACACAGTATACTACTGCTGAACAACTGGCAACACGACACTCTTTATCTTTAGCCCTTGACATGCCATTCAAAAAGTTGACTGCTCCTGGAATGACTGATGTTAAGCCATCCACATCAGTTAAAAATCAAGTGCAGATTAGAAATACTACAGAGAAGGTTGCCAGTAGTTTTGTACCACCTCAACAAGCTTTGTTGGGATCTTCTGATTTGCATGCAAAATCCAAATTAGCAGATGAAAAACCAGTCTTGAAGGGTAATCTAATTTCAGATCCTGTGGTAAAATCTGCCACAGCAACTTTGGGGACACGAATTGATCCCCTTTCAAATACTATATCACAAATTAAAGTTGCTCAAGTAAAAAATGCCATAGATACCAAGCCAGCAGTCAGCTCTTTGACAAAGCCATCCATTTCTACCAATTTGCCTTCTGATCCAAAGAACAAACATGTTACCCCTTTGGCTGATAAAGGTGCTCAAGTAAAAAATGCCGTGGATACTACTGAGCCTGCTGTTAGCTCTTTGACAAAGCCATCTATTTCTACCAATTTGCCTTCTGACCCAAAGAACAAACACGCTACCCCTTTGGCTGATAAAGTTCCATTGAAGCAAGATGTTAATCCCACAAAAGAGTTACAAGTTTCTAATCCGAGCACCACACCAAAAGAGAAGTTACAAGAAAATGAGCCTCCTAAAGTTACCACTGGAAGCCAGGTTGATAGCAACCCAGAGAAGGGAAGATTAGAAAAAGGTCAAGAGACGAGCATACCTCTTGTTAAAATTAGTGGTGGTGAGGAAGTTTCAAAAGATAAAGCAAATCAAGGAGTAGTGTGTGAAGAGCAAGGAAGTGTTAAGAAGGCTACTGAGAAAAACAACATTGACAAGGGGAGTCAAAGTTTAGAGCAAGACAAGAAGATAAATTCAATTAATCAAAGTTCAAATGATCAAAACGGGAATGATAAACATGTAAATTTGCCAGTACAAGATGAACTCAGCCAAAGTGCCAAGGTAGTAAAAAATGATGGGGAATGTTGA

Predicted protein sequences of Glyma06g10170

Limit To All Plant Sequences

>Glyma06g10170.1   sequence type=predicted peptide   gene model=Glyma06g10170   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPEKKSKKVSFTEEDAVTFIQRYDATTVLTLLQEVAHYSQPKIDWFELVEKSATGISNAREYQMLWRHLAYRHSLPENFEDGAEPLDDDSDLECELEALPPVSLECASEAAACVKVMIASRTLSESAPSSSTIEAPLTINVPVCHSSRTRIENSQPSNLMQGTSFIFPVTVQRQTLPTISSTDGIETKGIVGGNMASKRKRKAWSEEEDMQLRAAVQRWGEGNWATMAKGDDFPIKRSATQLAQRWSILRKKDGCTNTGTVTSTQYTTAEQLATRHSLSLALDMPFKKLTAPGMTDVKPSTSVKNQVQIRNTTEKVASSFVPPQQALLGSSDLHAKSKLADEKPVLKGNLISDPVVKSATATLGTRIDPLSNTISQIKVAQVKNAIDTKPAVSSLTKPSISTNLPSDPKNKHVTPLADKGAQVKNAVDTTEPAVSSLTKPSISTNLPSDPKNKHATPLADKVPLKQDVNPTKELQVSNPSTTPKEKLQENEPPKVTTGSQVDSNPEKGRLEKGQETSIPLVKISGGEEVSKDKANQGVVCEEQGSVKKATEKNNIDKGSQSLEQDKKINSINQSSNDQNGNDKHVNLPVQDELSQSAKVVKNDGEC*

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