SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G10920 | AT | Annotation by Michelle Graham. TAIR10: L-Aspartase-like family protein | chr5:3441805-3443892 FORWARD LENGTH=517 | SoyBase | E_val: 0 | ISS |
| GO:0006164 | GO-bp | Annotation by Michelle Graham. GO Biological Process: purine nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0006526 | GO-bp | Annotation by Michelle Graham. GO Biological Process: arginine biosynthetic process | SoyBase | N/A | ISS |
| GO:0009165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process | SoyBase | N/A | ISS |
| GO:0042450 | GO-bp | Annotation by Michelle Graham. GO Biological Process: arginine biosynthetic process via ornithine | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0009570 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004056 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: argininosuccinate lyase activity | SoyBase | N/A | ISS |
| KOG1316 | KOG | Argininosuccinate lyase | JGI | ISS | |
| PTHR11444 | Panther | ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE | JGI | ISS | |
| PTHR11444:SF3 | Panther | FUMARATE HYDRATASE | JGI | ISS | |
| PF00206 | PFAM | Lyase | JGI | ISS | |
| UniRef100_G7J530 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Argininosuccinate lyase n=1 Tax=Medicago truncatula RepID=G7J530_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K9R1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9R1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g10130 not represented in the dataset |
Glyma06g10130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g096700 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g10130.1 sequence type=CDS gene model=Glyma06g10130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTTCAAATGGTAGGATGCTGTGTTCAAGCTTGATTACAGCACCTCCGTCATCCTCCCTCTCCAGAACTACTCCATCCTACTTCTGCTCATTTCCTTCTCGTAGAATCATCTTCACGCCAAGAATTGGATCATCTCCGGCCCCGGCCCAGGCCCAGGCCCAGCCCAAGGAAGCCAAGCTCTGGGGTGGCAGGTTCGAGGAGGGCGTAACCGACGTTGTGGAGAGGTTCACCGAGTCGATCTCCTTCGACAAGAAGCTCTACAAACAAGACATCACGGGAAGCAGAGCACACGCTTCAATGCTCGCTCACCAGGGTTTGATAAGCGAGATTGACAGAGACTCTATTCTCCAAGGATTGGATGAAATAGAGAGGCGCATTGAGAATGGAGAGTTCAATTGGAGAGCTGACAGGGAGGATGTGCACATGAACATCGAGGCCGCGCTCACCGACTTGATCGGTGAGCCTGCCAAGAAGCTTCACACTGCGCGGAGCCGGAACGATCAGGTCTTGACGGATTTTCGCCTCTGGTGTCGGGACGCCATTGACAAGATCCTCCTGAGCATGAAGCAGCTCCAGGTCTCGCTGATCACCCTGGCTTTGAACAATCAGGGCCTCATTGTTCCTGGCTATACTCACTTGCAGCGCGCGCAGCCGGTTTTGCTGCAGCATCTTCTCTTGGCTTATGTTGAGGAGATTGAGCGTGATGCTGGTCGTTTGGTAGATTGTAGGGCTAGGATGAATTTCTGCCCCTTAGGAGCTTGTGCCTTGGCTGGTACAGGGCTTCCTATTGATCGATTCATGACTTCCGAAGCTTTAGGGTTTACGGCTCCTTTGAGGAATAGTATAGATGCTGTTTCAGACCGAGATTTTGTACTGGAGTTTCTTTCTGCTAATGCCATCACAGCTGTGCATCTTTCTCGACTTGGTGAAGAGTGGGTATTGTGGGCTTCGGAGGAATTTGGATTCATCACACCAAGTGACTCTGTTTCAACTGGAAGTAGTATAATGCCTCAGAAAAAGAATCCAGATCCGATGGAACTTGTTCGTGGGAAGTCTGCCAGAGTCATAGGGGATCTTGTTACTCTTCTCACATTGTGCAAAGGACTTCCTCATGCTTACAACCGCGATTTGCAGGAAGATAAAGAACCAGTATTTGACAGCGTTAAAACAATTTTGGGGATGCTTGAGGTATCAGCAGAATTCGCTCTAAAAATTACTTTCAATTGGGAAAGAATACAAAAGGCATTACCTGCTGGTCATCTTGATGCAACCACACTTGCTGATTATCTTGTTAATAAGGGCGTGCCATTTAGAACGTCTCACGATATCGCTGGAAAATCTGTTGCTTTATGTACATCGAAGAACTGCCAACTGCTAGACTTAAGTCTTGATGAGCTGAGAAGTATAAATCCAGTCTTTGAGGAGGATGTGTATGAATTTCTTGGAGTAGAAAATGCAATTAAGAAATTTGTCTCTTACGGCTCCACCGGGTCAGCATGTGTTGCCAGCCAACTTGATTATTGGCTGAGAAAACTTGAAATGAAGTGA
>Glyma06g10130.1 sequence type=predicted peptide gene model=Glyma06g10130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVSNGRMLCSSLITAPPSSSLSRTTPSYFCSFPSRRIIFTPRIGSSPAPAQAQAQPKEAKLWGGRFEEGVTDVVERFTESISFDKKLYKQDITGSRAHASMLAHQGLISEIDRDSILQGLDEIERRIENGEFNWRADREDVHMNIEAALTDLIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDKILLSMKQLQVSLITLALNNQGLIVPGYTHLQRAQPVLLQHLLLAYVEEIERDAGRLVDCRARMNFCPLGACALAGTGLPIDRFMTSEALGFTAPLRNSIDAVSDRDFVLEFLSANAITAVHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPHAYNRDLQEDKEPVFDSVKTILGMLEVSAEFALKITFNWERIQKALPAGHLDATTLADYLVNKGVPFRTSHDIAGKSVALCTSKNCQLLDLSLDELRSINPVFEEDVYEFLGVENAIKKFVSYGSTGSACVASQLDYWLRKLEMK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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