Glyma06g10130 - SoyBase

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Report for Sequence Feature Glyma06g10130

Feature Type:	gene_model
Chromosome:	Gm06
Start:	7639005
stop:	7642465
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g10130

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G10920	AT	Annotation by Michelle Graham. TAIR10: L-Aspartase-like family protein \| chr5:3441805-3443892 FORWARD LENGTH=517	SoyBase	E_val: 0	ISS
GO:0006164	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0006526	GO-bp	Annotation by Michelle Graham. GO Biological Process: arginine biosynthetic process	SoyBase	N/A	ISS
GO:0009165	GO-bp	Annotation by Michelle Graham. GO Biological Process: nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0042450	GO-bp	Annotation by Michelle Graham. GO Biological Process: arginine biosynthetic process via ornithine	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004056	GO-mf	Annotation by Michelle Graham. GO Molecular Function: argininosuccinate lyase activity	SoyBase	N/A	ISS
KOG1316	KOG	Argininosuccinate lyase	JGI		ISS
PTHR11444	Panther	ASPARTATEAMMONIA/ARGININOSUCCINATE/ADENYLOSUCCINATE LYASE	JGI		ISS
PTHR11444:SF3	Panther	FUMARATE HYDRATASE	JGI		ISS
PF00206	PFAM	Lyase	JGI		ISS
UniRef100_G7J530	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Argininosuccinate lyase n=1 Tax=Medicago truncatula RepID=G7J530_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K9R1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9R1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g10130

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g10130 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g096700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g10130

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g10130

Limit To All Plant Sequences

>Glyma06g10130.1   sequence type=CDS   gene model=Glyma06g10130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTCAAATGGTAGGATGCTGTGTTCAAGCTTGATTACAGCACCTCCGTCATCCTCCCTCTCCAGAACTACTCCATCCTACTTCTGCTCATTTCCTTCTCGTAGAATCATCTTCACGCCAAGAATTGGATCATCTCCGGCCCCGGCCCAGGCCCAGGCCCAGCCCAAGGAAGCCAAGCTCTGGGGTGGCAGGTTCGAGGAGGGCGTAACCGACGTTGTGGAGAGGTTCACCGAGTCGATCTCCTTCGACAAGAAGCTCTACAAACAAGACATCACGGGAAGCAGAGCACACGCTTCAATGCTCGCTCACCAGGGTTTGATAAGCGAGATTGACAGAGACTCTATTCTCCAAGGATTGGATGAAATAGAGAGGCGCATTGAGAATGGAGAGTTCAATTGGAGAGCTGACAGGGAGGATGTGCACATGAACATCGAGGCCGCGCTCACCGACTTGATCGGTGAGCCTGCCAAGAAGCTTCACACTGCGCGGAGCCGGAACGATCAGGTCTTGACGGATTTTCGCCTCTGGTGTCGGGACGCCATTGACAAGATCCTCCTGAGCATGAAGCAGCTCCAGGTCTCGCTGATCACCCTGGCTTTGAACAATCAGGGCCTCATTGTTCCTGGCTATACTCACTTGCAGCGCGCGCAGCCGGTTTTGCTGCAGCATCTTCTCTTGGCTTATGTTGAGGAGATTGAGCGTGATGCTGGTCGTTTGGTAGATTGTAGGGCTAGGATGAATTTCTGCCCCTTAGGAGCTTGTGCCTTGGCTGGTACAGGGCTTCCTATTGATCGATTCATGACTTCCGAAGCTTTAGGGTTTACGGCTCCTTTGAGGAATAGTATAGATGCTGTTTCAGACCGAGATTTTGTACTGGAGTTTCTTTCTGCTAATGCCATCACAGCTGTGCATCTTTCTCGACTTGGTGAAGAGTGGGTATTGTGGGCTTCGGAGGAATTTGGATTCATCACACCAAGTGACTCTGTTTCAACTGGAAGTAGTATAATGCCTCAGAAAAAGAATCCAGATCCGATGGAACTTGTTCGTGGGAAGTCTGCCAGAGTCATAGGGGATCTTGTTACTCTTCTCACATTGTGCAAAGGACTTCCTCATGCTTACAACCGCGATTTGCAGGAAGATAAAGAACCAGTATTTGACAGCGTTAAAACAATTTTGGGGATGCTTGAGGTATCAGCAGAATTCGCTCTAAAAATTACTTTCAATTGGGAAAGAATACAAAAGGCATTACCTGCTGGTCATCTTGATGCAACCACACTTGCTGATTATCTTGTTAATAAGGGCGTGCCATTTAGAACGTCTCACGATATCGCTGGAAAATCTGTTGCTTTATGTACATCGAAGAACTGCCAACTGCTAGACTTAAGTCTTGATGAGCTGAGAAGTATAAATCCAGTCTTTGAGGAGGATGTGTATGAATTTCTTGGAGTAGAAAATGCAATTAAGAAATTTGTCTCTTACGGCTCCACCGGGTCAGCATGTGTTGCCAGCCAACTTGATTATTGGCTGAGAAAACTTGAAATGAAGTGA

Predicted protein sequences of Glyma06g10130

Limit To All Plant Sequences

>Glyma06g10130.1   sequence type=predicted peptide   gene model=Glyma06g10130   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVSNGRMLCSSLITAPPSSSLSRTTPSYFCSFPSRRIIFTPRIGSSPAPAQAQAQPKEAKLWGGRFEEGVTDVVERFTESISFDKKLYKQDITGSRAHASMLAHQGLISEIDRDSILQGLDEIERRIENGEFNWRADREDVHMNIEAALTDLIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDKILLSMKQLQVSLITLALNNQGLIVPGYTHLQRAQPVLLQHLLLAYVEEIERDAGRLVDCRARMNFCPLGACALAGTGLPIDRFMTSEALGFTAPLRNSIDAVSDRDFVLEFLSANAITAVHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPHAYNRDLQEDKEPVFDSVKTILGMLEVSAEFALKITFNWERIQKALPAGHLDATTLADYLVNKGVPFRTSHDIAGKSVALCTSKNCQLLDLSLDELRSINPVFEEDVYEFLGVENAIKKFVSYGSTGSACVASQLDYWLRKLEMK*

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