Glyma06g10110 - SoyBase

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Report for Sequence Feature Glyma06g10110

Feature Type:	gene_model
Chromosome:	Gm06
Start:	7624176
stop:	7627365
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g10110

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G23420	AT	Annotation by Michelle Graham. TAIR10: Plant-specific transcription factor YABBY family protein \| chr1:8317423-8319104 FORWARD LENGTH=231	SoyBase	E_val: 5.00E-59	ISS
GO:0006333	GO-bp	Annotation by Michelle Graham. GO Biological Process: chromatin assembly or disassembly	SoyBase	N/A	ISS
GO:0009944	GO-bp	Annotation by Michelle Graham. GO Biological Process: polarity specification of adaxial/abaxial axis	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
PF04690	PFAM	YABBY protein	JGI		ISS
UniRef100_G7K086	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Axial regulator YABBY n=1 Tax=Medicago truncatula RepID=G7K086_MEDTR	SoyBase	E_val: 2.00E-118	ISS
UniRef100_I1K9Q9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9Q9_SOYBN	SoyBase	E_val: 3.00E-150	ISS

Expression Patterns of Glyma06g10110

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g10110 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g096500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g10110

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g10110

Limit To All Plant Sequences

>Glyma06g10110.2   sequence type=transcript   gene model=Glyma06g10110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCAATGTTGTTGGAGTGCTATCCGGCAATGAAAACCACCTTAAGCACCCCATTCCACAAATCATTAAAATATGTTACATACAATGTGGATTCTGTAACACTATTTTAATGGTAAGTGTTCCATGCAGCAGTTTGTCGATGGTGGTGACAGTAAGATGCGGGCACTGCACAAACCTCCTTTCTGTTAATATGTTGAAAGCTTCTTTTATCCCTTTCCACCTCTTAGCATCTCTTAGTCATCTTGAGCCAAAAGAAAGTAGTCCAGAAGAAGATGCTAACAAGACTTTGAACAGTCACAGTGCATCCATGATGACCTATTCTGATTGTGAGGAAGAGGATATAATTCCAATGAGTCATCATGTTGTGAATAAACCCCCAGAGAAGAGACAGCGAACACCATCAGCTTATAACTGCTTCATCAAGGAGGAGATTAAAAGGCTAAAGGCTGAAAATCCTGAAATGACCCACAAGGAAGCTTTTAGTACAGCTGCAAAAAATTGGGCCAATTTCCCCCAAACTCAGTGGTGCAAAGGAGATGAAGAGAGGTGTAGCCAGACAGAAAAACTTGTTGATCTTGACTCACTAGTGGACCCTGCTGATGCTGAGGTCAATGAAGAAGTTCAAGGTTTCCGTGGAAGAAAGGTGCCAAGAAATTCCATCTTGGAAACGACACAGTTTGAATGAAGAAAGCTCAGCATATGTGACATAACTAGCTATATTACTATTTTCTGTCTTTATGGTTTCCACTAAATCATTTTCCTAATTAAGAAAAGATGCTCTTGGTAATGAAAACGAATTAAGTAGGGTTGAGACTTGAGAGCTGACAATTTGAGACTTTAGGAAGTGCTTTACAATTGATACTTTTATCTGACACCTTTCCTTTCCAGCATACCAGTTCCTTTAACTAGTCTTCAGGACCACAAATGTTCTTTCTTTTGTTTTTATGTTTTTGGTTTTCATAAATGTTCATTTGTTAAGTGTTCCTTGATGTTAATTCTCAAACTCTGTGCATGTTATTAAGGGCAAGGTAACAGATGATGGCTACAGATTTTCGTGATAGATAAACATGCATCACATC

Coding sequences of Glyma06g10110

Limit To All Plant Sequences

>Glyma06g10110.1   sequence type=CDS   gene model=Glyma06g10110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTACACTGACCCGTCTTTTTGATCTTCCGGAACAGATATGTTACATACAATGTGGATTCTGTAACACTATTTTAATGGTAAGTGTTCCATGCAGCAGTTTGTCGATGGTGGTGACAGTAAGATGCGGGCACTGCACAAACCTCCTTTCTGTTAATATGTTGAAAGCTTCTTTTATCCCTTTCCACCTCTTAGCATCTCTTAGTCATCTTGAGCCAAAAGAAAGTAGTCCAGAAGAAGATGCTAACAAGACTTTGAACAGTCACAGTGCATCCATGATGACCTATTCTGATTGTGAGGAAGAGGATATAATTCCAATGAGTCATCATGTTGTGAATAAACCCCCAGAGAAGAGACAGCGAACACCATCAGCTTATAACTGCTTCATCAAGGAGGAGATTAAAAGGCTAAAGGCTGAAAATCCTGAAATGACCCACAAGGAAGCTTTTAGTACAGCTGCAAAAAATTGGGCCAATTTCCCCCAAACTCAGTGGTGCAAAGGAGATGAAGAGAGGTGTAGCCAGACAGAAAAACTTGTTGATCTTGACTCACTAGTGGACCCTGCTGATGCTGAGGTCAATGAAGAAGTTCAAGGTTTCCGTGGAAGAAAGGTGCCAAGAAATTCCATCTTGGAAACGACACAGTTTGAATGA

>Glyma06g10110.2   sequence type=CDS   gene model=Glyma06g10110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTCAATGTTGTTGGAGTGCTATCCGGCAATGAAAACCACCTTAAGCACCCCATTCCACAAATCATTAAAATATGTTACATACAATGTGGATTCTGTAACACTATTTTAATGGTAAGTGTTCCATGCAGCAGTTTGTCGATGGTGGTGACAGTAAGATGCGGGCACTGCACAAACCTCCTTTCTGTTAATATGTTGAAAGCTTCTTTTATCCCTTTCCACCTCTTAGCATCTCTTAGTCATCTTGAGCCAAAAGAAAGTAGTCCAGAAGAAGATGCTAACAAGACTTTGAACAGTCACAGTGCATCCATGATGACCTATTCTGATTGTGAGGAAGAGGATATAATTCCAATGAGTCATCATGTTGTGAATAAACCCCCAGAGAAGAGACAGCGAACACCATCAGCTTATAACTGCTTCATCAAGGAGGAGATTAAAAGGCTAAAGGCTGAAAATCCTGAAATGACCCACAAGGAAGCTTTTAGTACAGCTGCAAAAAATTGGGCCAATTTCCCCCAAACTCAGTGGTGCAAAGGAGATGAAGAGAGGTGTAGCCAGACAGAAAAACTTGTTGATCTTGACTCACTAGTGGACCCTGCTGATGCTGAGGTCAATGAAGAAGTTCAAGGTTTCCGTGGAAGAAAGGTGCCAAGAAATTCCATCTTGGAAACGACACAGTTTGAATGA

Predicted protein sequences of Glyma06g10110

Limit To All Plant Sequences

>Glyma06g10110.1   sequence type=predicted peptide   gene model=Glyma06g10110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSTLTRLFDLPEQICYIQCGFCNTILMVSVPCSSLSMVVTVRCGHCTNLLSVNMLKASFIPFHLLASLSHLEPKESSPEEDANKTLNSHSASMMTYSDCEEEDIIPMSHHVVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPEMTHKEAFSTAAKNWANFPQTQWCKGDEERCSQTEKLVDLDSLVDPADAEVNEEVQGFRGRKVPRNSILETTQFE*

>Glyma06g10110.2   sequence type=predicted peptide   gene model=Glyma06g10110   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
VNVVGVLSGNENHLKHPIPQIIKICYIQCGFCNTILMVSVPCSSLSMVVTVRCGHCTNLLSVNMLKASFIPFHLLASLSHLEPKESSPEEDANKTLNSHSASMMTYSDCEEEDIIPMSHHVVNKPPEKRQRTPSAYNCFIKEEIKRLKAENPEMTHKEAFSTAAKNWANFPQTQWCKGDEERCSQTEKLVDLDSLVDPADAEVNEEVQGFRGRKVPRNSILETTQFE*

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