Glyma06g10060 - SoyBase

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Report for Sequence Feature Glyma06g10060

Feature Type:	gene_model
Chromosome:	Gm06
Start:	7584943
stop:	7594592
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g10060

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G10490	AT	Annotation by Michelle Graham. TAIR10: MSCS-like 2 \| chr5:3300376-3304005 REVERSE LENGTH=673	SoyBase	E_val: 0	ISS
GO:0009657	GO-bp	Annotation by Michelle Graham. GO Biological Process: plastid organization	SoyBase	N/A	ISS
GO:0010020	GO-bp	Annotation by Michelle Graham. GO Biological Process: chloroplast fission	SoyBase	N/A	ISS
GO:0055085	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane transport	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009526	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid envelope	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0005216	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ion channel activity	SoyBase	N/A	ISS
PF00924	PFAM	Mechanosensitive ion channel	JGI		ISS
UniRef100_G7J535	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: MscS family inner membrane protein ynaI n=1 Tax=Medicago truncatula RepID=G7J535_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K9Q3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9Q3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g10060

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g10060

Paralog	Evidence	Comments
Glyma04g10060	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g10060 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g096100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g10060

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g10060

Limit To All Plant Sequences

>Glyma06g10060.1   sequence type=CDS   gene model=Glyma06g10060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTCTGTCCGGGTTCAACGCAATTGTCTCATGATGTTAGGCTCAACAGTAATATTGGATTCTGTAGTTTCCATCACAATCGGATGGGGGTTGGTCGATTACATTTGGTCACTATAAATCTTTCACCAAGTAATTTGAAGCAAGACTCTTCAGCATTCCATCTTTTAAGTAGACTACATGCCCCAATAAGGCATGTGCCTTCCAGATGTAATGTTTTCATTTGTCGGTCTGTCCTAATACCTGGTGGAGGGAGTGGGACTCCACTCATGAAATCTGCTAGTGTTATTTTAACAAGGTCATATGATGCTCTACAAGGAAACCCTATTTTCCTTCAATTGATCCCAGCCATTGGTATCATTGCCTTTGCTGTTTGCGGTCTTGAGCCACTCCTTCGTCTCAGCAGGGTTTTGTTCCTTCAGAGTACTGACATTAGTTGGAAGAAAAGTAGTTCGCAATCTATTATGACATCTTATATTCAGCCATTGCTGTTGTGGACTGGGGCAATGCTTGTATGCAGGGCATTAGATCCACTAGTCCTACCATCTGAGTCCAGCCAGGTTGTGAAGCAGCGGCTGCTGAATTTTGTGAGATCTTTGTCAACAGTGATTTCATTTGCTTACTGTTTATCAAGCTTAATTCAACAAGCGCAAAAATTCTTTCTGGAGGGAAATGACTCCAGTGGTGCAAGAAATATGGGCCTTGATTTTGCTGGGAAGGCAGTATATACTGCTGTATGGGTTGCTGCTGTTTCGTTGTTCATGGAGTTGCTAGGTTTCTCCACACAGAAGTGGGTAACTGCTGGTGGTTTGGGCACAGTATTGCTCACTCTGGCAGGTCGTGAGATATTTACAAACTTTCTTTCGAGCATAATGATCCATGCAACTCGGCCATTTATAGTAAACGAGTGGATTCAAACGAAGATTGAAGGATATGAGGTTTCTGGCACAGTTGAGCATGTAGGCTGGTGGTCACCAACCATCATCAGAGGTGATGATCGTGAGGCAGTTCATATTCCTAACCACAAGTTTACAGTAAATGTTGTGAGAAATCTGAGCCAGAAATCTCATTGGCGTATCAAGAGTTACATTGCTATCAGTCACTTGGATGTTAACAAAGTTAATAATATTGTAGCTGATATGCGCAAGGTTTTGTCTAAAAATCCTCAAGTAGAGCAGCAAAAATTACACAGAAGGGTCTTTTTGGAGAATGTCAATCCTGAAAATCAGGCTCTTATGATATTAATATCTTGCTTTGTGAAAACTTCTCATTTTGAAGAGTACCTCTGTGTTAAGGAGGCAATCCTTTTGGATCTTCTCAGAGTGGTCAGTCATCATCGAGCCAGGCTAGCCACTCCCATCCGCACTGTTCAGAAAATATACAGTGAGGCTGACTCGGAAAATATACCCTTTGGGGACACCATTTTCACTCGATCTAGAGCAGCAAATCGTCCATTTCTACTGATAGAACCACCGTATAAAGTTAATGGCGAAGATAAAGTTAAGGCTTCAACACGTTCAACTCGTGCAAATGAGGAAAAAGATTCCAAAATTGATGAAACCATGGCATCTGACACCAAAGAAGATGAGAATTTTACAGCAACATCAACCTCCTCACCTGATGTAATTTCCAAGGATAAATCCAAGTCATTGTCTGATGCCCAGCCTAAAAAGGAAAATGCAGTAGATGCAGGAAAGGGAACTACAGTTCCTGTATCTAAAAACCTTGTTCAAAGTGCTGTTCCTGAAGCCTCTCTTGCTACTACCCAAGAGATCACTTCTGCAACTTCTTCACAGTCAAAGCAAGATGAAGAGAAATCTTCTGTGTCTTTGCCATCAGTTAGGCCTTCCTTGGAAGAGAACATTCTTCTCGGGGTTGCCATAGAAGGCTCAAAACGAACTCTTCCAATTGAGGGAGAAATGACTCCATCTCCTATGCCTGCAGAGTCACAAGAATTTGCTGTTCAACGGAATGGGGGTGGACCTCCGGCTAGCAAGGATAAGAAGGATGGTCAGTCTTCATTTCCAACTGGTAAACAGAATGACTAG

Predicted protein sequences of Glyma06g10060

Limit To All Plant Sequences

>Glyma06g10060.1   sequence type=predicted peptide   gene model=Glyma06g10060   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVCPGSTQLSHDVRLNSNIGFCSFHHNRMGVGRLHLVTINLSPSNLKQDSSAFHLLSRLHAPIRHVPSRCNVFICRSVLIPGGGSGTPLMKSASVILTRSYDALQGNPIFLQLIPAIGIIAFAVCGLEPLLRLSRVLFLQSTDISWKKSSSQSIMTSYIQPLLLWTGAMLVCRALDPLVLPSESSQVVKQRLLNFVRSLSTVISFAYCLSSLIQQAQKFFLEGNDSSGARNMGLDFAGKAVYTAVWVAAVSLFMELLGFSTQKWVTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFIVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFTVNVVRNLSQKSHWRIKSYIAISHLDVNKVNNIVADMRKVLSKNPQVEQQKLHRRVFLENVNPENQALMILISCFVKTSHFEEYLCVKEAILLDLLRVVSHHRARLATPIRTVQKIYSEADSENIPFGDTIFTRSRAANRPFLLIEPPYKVNGEDKVKASTRSTRANEEKDSKIDETMASDTKEDENFTATSTSSPDVISKDKSKSLSDAQPKKENAVDAGKGTTVPVSKNLVQSAVPEASLATTQEITSATSSQSKQDEEKSSVSLPSVRPSLEENILLGVAIEGSKRTLPIEGEMTPSPMPAESQEFAVQRNGGGPPASKDKKDGQSSFPTGKQND*

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