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Report for Sequence Feature Glyma06g10020

Feature Type:gene_model
Chromosome:Gm06
Start:7555671
stop:7561695
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g10020
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G22540AT Annotation by Michelle Graham. TAIR10: K-box region and MADS-box transcription factor family protein | chr2:9580417-9583603 FORWARD LENGTH=240 SoyBaseE_val: 1.00E-75ISS
GO:0000165GO-bp Annotation by Michelle Graham. GO Biological Process: MAPK cascade SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0006612GO-bp Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane SoyBaseN/AISS
GO:0009266GO-bp Annotation by Michelle Graham. GO Biological Process: response to temperature stimulus SoyBaseN/AISS
GO:0009556GO-bp Annotation by Michelle Graham. GO Biological Process: microsporogenesis SoyBaseN/AISS
GO:0009617GO-bp Annotation by Michelle Graham. GO Biological Process: response to bacterium SoyBaseN/AISS
GO:0009862GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway SoyBaseN/AISS
GO:0009867GO-bp Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway SoyBaseN/AISS
GO:0009910GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of flower development SoyBaseN/AISS
GO:0009965GO-bp Annotation by Michelle Graham. GO Biological Process: leaf morphogenesis SoyBaseN/AISS
GO:0010076GO-bp Annotation by Michelle Graham. GO Biological Process: maintenance of floral meristem identity SoyBaseN/AISS
GO:0010310GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process SoyBaseN/AISS
GO:0010363GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response SoyBaseN/AISS
GO:0010582GO-bp Annotation by Michelle Graham. GO Biological Process: floral meristem determinacy SoyBaseN/AISS
GO:0030154GO-bp Annotation by Michelle Graham. GO Biological Process: cell differentiation SoyBaseN/AISS
GO:0031348GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response SoyBaseN/AISS
GO:0035304GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein dephosphorylation SoyBaseN/AISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0045893GO-bp Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0048438GO-bp Annotation by Michelle Graham. GO Biological Process: floral whorl development SoyBaseN/AISS
GO:0048481GO-bp Annotation by Michelle Graham. GO Biological Process: ovule development SoyBaseN/AISS
GO:0052543GO-bp Annotation by Michelle Graham. GO Biological Process: callose deposition in cell wall SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0000900GO-mf Annotation by Michelle Graham. GO Molecular Function: translation repressor activity, nucleic acid binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG0014 KOG MADS box transcription factor JGI ISS
PTHR11945Panther MADS BOX PROTEIN JGI ISS
PTHR11945:SF75Panther SVP (SHORT VEGETATIVE PHASE), TRANSCRIPTION FACTOR JGI ISS
PF00319PFAM SRF-type transcription factor (DNA-binding and dimerisation domain) JGI ISS
PF01486PFAM K-box region JGI ISS
UniRef100_C6T8M2UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T8M2_SOYBN SoyBaseE_val: 7.00E-167ISS
UniRef100_Q9M725UniRef Annotation by Michelle Graham. Most informative UniRef hit: MADS-box transcription factor n=1 Tax=Canavalia lineata RepID=Q9M725_CANLI SoyBaseE_val: 3.00E-90ISS

Expression Patterns of Glyma06g10020
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g10020 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g095700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g10020
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma06g10020
>Glyma06g10020.3   sequence type=transcript   gene model=Glyma06g10020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCTCGTTCTCCTTCTACTTCCTTTCTTTCATACTATATCTGATTGGTAACATTTTTTTTTTCTTCTTCAATTTTTCCCCTTTCAGTAATCGAGATAGTGCTCCAACTAGCTAATAGAGTGAAATATATCAACAAATTAAAATCGAACCCCACCAATCCAAAGCTATCATACCCTTGCATGTTCACGAGCTTCCTTTTGATTGGTTTGTGCAGCTGCTAATTATTAAAATGACGAGAACGAGGATAAAGATAAAGAAAATCGACAACATAACGGCGAGGCAGGTAACATTTTCTAAGAGGAGGCGAGGGCTATTCAAGAAAGCTGAAGAGCTTTCTGTGCTATGCGATGCTGAGGTTGGTCTCATTGTTTTCTCATCTACCGGGAAGCTCTTTGATTATAGCAGCTCCAGTATGAATGACATAGTTACAAAGTACAGTACGCATTCCCATGGCATCAACAAATTGGATAAGCCATCACTAGAACTGCAGCTAGAAGCTAGCAATAGCGCCAAATTGAGTAAGGAAATTGCAGATAGAACCCAAGAATTAAGTTGGTTGAAAGGCGACGATCTTCAAGGACTAGGTCTAAATGAGTTGCAGCAACTGGAGAAAACACTTGAAATAGGACTCGATCGCGTGACTGACATAAAGGAAAATCAGATAATGAGCCAGATTTCTGAACTTCAGAAAAAGGGAATCCTGTTAGAAGAGGAGAACAAGCATTTAACGAAAAAGCTAGCGGAGAAGGAGAAGGAGGCTATGCTGTGTAAGGCAAAAATTCCTTTCATGGTGGACTCAGATAAGGGAATAATGCAGGAAGAAGGTGTCTCGTTAGATTCTACAAATAACATTAGTAGTTGCATCAGTGATCCTCCTCTCGAGGATGGTTCCTCGGACATATCTCTTACGTTAGGGCTACCCTTCTCTAACTGAAGAGGTAACATGGTGAAAGAGTCTTGCCCCGTTTTGAGCGTTATTAAGATTTTTTTTCTTAAAACTGTACCAATATTTTTTTTAATTAAGAAAAAAACTGCACCACTATATATATGTTTTTGTTGGATTTGTTTATAAGTGAGAAGTGTATTAAAAAGTAAAATGTATGATTGTTAGCTAAACCAATGAAATATATTTTATATACTTCCGTGTGTATTAATTTAATTTAATATAATATATTAACTATTAATTTTCATCACATGTATATCTTTGTAGTAGTAGTATTTTTTTTTTGTC

>Glyma06g10020.4   sequence type=transcript   gene model=Glyma06g10020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGAAAGTATATTGGATAATTAGTAATAAAAATAGAAAGTGTCCAGCGTTTACCTATTAAGGGAAGGGTTTCTTTCCTTTCTTGATACCAAGCCAGCATTTCCAATCAAGGTTTGTGCAGCTGCTAATTATTAAAATGACGAGAACGAGGATAAAGATAAAGAAAATCGACAACATAACGGCGAGGCAGGTAACATTTTCTAAGAGGAGGCGAGGGCTATTCAAGAAAGCTGAAGAGCTTTCTGTGCTATGCGATGCTGAGGTTGGTCTCATTGTTTTCTCATCTACCGGGAAGCTCTTTGATTATAGCAGCTCCAGTATGAATGACATAGTTACAAAGTACAGTACGCATTCCCATGGCATCAACAAATTGGATAAGCCATCACTAGAACTGCAGCTAGAAGCTAGCAATAGCGCCAAATTGAGTAAGGAAATTGCAGATAGAACCCAAGAATTAAGTTGGTTGAAAGGCGACGATCTTCAAGGACTAGGTCTAAATGAGTTGCAGCAACTGGAGAAAACACTTGAAATAGGACTCGATCGCGTGACTGACATAAAGGAAAATCAGATAATGAGCCAGATTTCTGAACTTCAGAAAAAGGGAATCCTGTTAGAAGAGGAGAACAAGCATTTAACGAAAAAGCTAGCGGAGAAGGAGAAGGAGGCTATGCTGTGTAAGGCAAAAATTCCTTTCATGGTGGACTCAGATAAGGGAATAATGCAGGAAGAAGGTGTCTCGTTAGATTCTACAAATAACATTAGTAGTTGCATCAGTGATCCTCCTCTCGAGGATGGTTCCTCGGACATATCTCTTACGTTAGGGCTACCCTTCTCTAACTGAAGAGGTAACATGGTGAAAGAGTCTTGCCCCGTTTTGAGCGTTATTAAGATTTTTTTTCTTAAAACTGTACCAATATTTTTTTTAATTAAGAAAAAAACTGCACCACTATATATATGTTTTTGTTGGATTTGTTTATAAGTGAGAAGTGTATTAAAAAGTAAAATGTATGATTGTTAGCTAAACCAATGAAATATATTTTATATACTTC

>Glyma06g10020.5   sequence type=transcript   gene model=Glyma06g10020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTCTCGTTCTCCTTCTACTTCCTTTCTTTCATACTATATCTGATTGGTAACATTTTTTTTTTCTTCTTCAATTTTTCCCCTTTCAGTAATCGAGATAGTGCTCCAACTAGCTAATAGAGTGAAATATATCAACAAATTAAAATCGAACCCCACCAATCCAAAGCTATCATACCCTTGCATGTTCACGAGCTTCCTTTTGATTGGTTTGTGCAGCTGCTAATTATTAAAATGACGAGAACGAGGATAAAGATAAAGAAAATCGACAACATAACGGCGAGGCAGGTAACATTTTCTAAGAGGAGGCGAGGGCTATTCAAGAAAGCTGAAGAGCTTTCTGTGCTATGCGATGCTGAGGTTGGTCTCATTGTTTTCTCATCTACCGGGAAGCTCTTTGATTATAGCAGCTCCAGTATGAATGACATAGTTACAAAGTACAGTACGCATTCCCATGGCATCAACAAATTGGATAAGCCATCACTAGAACTGCAGCTAGAAGCTAGCAATAGCGCCAAATTGAGTAAGGAAATTGCAGATAGAACCCAAGAATTAAGTTGGTTGAAAGGCGACGATCTTCAAGGACTAGGTCTAAATGAGTTGCAGCAACTGGAGAAAACACTTGAAATAGGACTCGATCGCGTGACTGACATAAAGGAAAATCAGATAATGAGCCAGATTTCTGAACTTCAGAAAAAGCTAGCGGAGAAGGAGAAGGAGGCTATGCTGTGTAAGGCAAAAATTCCTTTCATGGTGGACTCAGATAAGGGAATAATGCAGGAAGAAGGTGTCTCGTTAGATTCTACAAATAACATTAGTAGTTGCATCAGTGATCCTCCTCTCGAGGATGGTTCCTCGGACATATCTCTTACGTTAGGGCTACCCTTCTCTAACTGAAGAGGTAACATGGTGAAAGAGTCTTGCCCCGTTTTGAGCGTTATTAAGATTTTTTTTCTTAAAACTGTACCAATATTTTTTTTAATTAAGAAAAAAACTGCACCACTATATATATGTTTTTGTTGGATTTGTTTATAAGTGAGAAGTGTATTAAAAAGTAAAATGTATGATTGTTAGCTAAACCAATGAAATATATTTTATATACTTCCGTGTGTATTAATTTAATTTAATATAATATATTAACTATTAATTTTCATCACATGTATATCTTTGTAGTAGTAGTATTTTTTTTTTGTC
Coding sequences of Glyma06g10020
>Glyma06g10020.2   sequence type=CDS   gene model=Glyma06g10020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGAGAACGAGGATAAAGATAAAGAAAATCGACAACATAACGGCGAGGCAGGTAACATTTTCTAAGAGGAGGCGAGGGCTATTCAAGAAAGCTGAAGAGCTTTCTGTGCTATGCGATGCTGAGGTTGGTCTCATTGTTTTCTCATCTACCGGGAAGCTCTTTGATTATAGCAGCTCCAGTATGAATGACATAGTTACAAAGTACAGTACGCATTCCCATGGCATCAACAAATTGGATAAGCCATCACTAGAACTGCAGCTAGAAGCTAGCAATAGCGCCAAATTGAGTAAGGAAATTGCAGATAGAACCCAAGAATTAAGTTGGTTGAAAGGCGACGATCTTCAAGGACTAGGTCTAAATGAGTTGCAGCAACTGGAGAAAACACTTGAAATAGGACTCGATCGCGTGACTGACATAAAGGAAAATCAGATAATGAGCCAGATTTCTGAACTTCAGAAAAAGGGAATCCTGTTAGAAGAGGAGAACAAGCATTTAACGAAAAAGCTAGCGGAGAAGGAGAAGGAGGCTATGCTGTGTAAGGCAAAAATTCCTTTCATGGTGGACTCAGATAAGGGAATAATGCAGGAAGAAGGTGTCTCGTTAGATTCTACAAATAACATTAGTAGTTGCATCAGTGATCCTCCTCTCGAGGATGGTTCCTCGGACATATCTCTTACGTTAGGGCTACCCTTCTCTAACTGA

>Glyma06g10020.3   sequence type=CDS   gene model=Glyma06g10020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGAGAACGAGGATAAAGATAAAGAAAATCGACAACATAACGGCGAGGCAGGTAACATTTTCTAAGAGGAGGCGAGGGCTATTCAAGAAAGCTGAAGAGCTTTCTGTGCTATGCGATGCTGAGGTTGGTCTCATTGTTTTCTCATCTACCGGGAAGCTCTTTGATTATAGCAGCTCCAGTATGAATGACATAGTTACAAAGTACAGTACGCATTCCCATGGCATCAACAAATTGGATAAGCCATCACTAGAACTGCAGCTAGAAGCTAGCAATAGCGCCAAATTGAGTAAGGAAATTGCAGATAGAACCCAAGAATTAAGTTGGTTGAAAGGCGACGATCTTCAAGGACTAGGTCTAAATGAGTTGCAGCAACTGGAGAAAACACTTGAAATAGGACTCGATCGCGTGACTGACATAAAGGAAAATCAGATAATGAGCCAGATTTCTGAACTTCAGAAAAAGGGAATCCTGTTAGAAGAGGAGAACAAGCATTTAACGAAAAAGCTAGCGGAGAAGGAGAAGGAGGCTATGCTGTGTAAGGCAAAAATTCCTTTCATGGTGGACTCAGATAAGGGAATAATGCAGGAAGAAGGTGTCTCGTTAGATTCTACAAATAACATTAGTAGTTGCATCAGTGATCCTCCTCTCGAGGATGGTTCCTCGGACATATCTCTTACGTTAGGGCTACCCTTCTCTAACTGA

>Glyma06g10020.4   sequence type=CDS   gene model=Glyma06g10020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGAGAACGAGGATAAAGATAAAGAAAATCGACAACATAACGGCGAGGCAGGTAACATTTTCTAAGAGGAGGCGAGGGCTATTCAAGAAAGCTGAAGAGCTTTCTGTGCTATGCGATGCTGAGGTTGGTCTCATTGTTTTCTCATCTACCGGGAAGCTCTTTGATTATAGCAGCTCCAGTATGAATGACATAGTTACAAAGTACAGTACGCATTCCCATGGCATCAACAAATTGGATAAGCCATCACTAGAACTGCAGCTAGAAGCTAGCAATAGCGCCAAATTGAGTAAGGAAATTGCAGATAGAACCCAAGAATTAAGTTGGTTGAAAGGCGACGATCTTCAAGGACTAGGTCTAAATGAGTTGCAGCAACTGGAGAAAACACTTGAAATAGGACTCGATCGCGTGACTGACATAAAGGAAAATCAGATAATGAGCCAGATTTCTGAACTTCAGAAAAAGGGAATCCTGTTAGAAGAGGAGAACAAGCATTTAACGAAAAAGCTAGCGGAGAAGGAGAAGGAGGCTATGCTGTGTAAGGCAAAAATTCCTTTCATGGTGGACTCAGATAAGGGAATAATGCAGGAAGAAGGTGTCTCGTTAGATTCTACAAATAACATTAGTAGTTGCATCAGTGATCCTCCTCTCGAGGATGGTTCCTCGGACATATCTCTTACGTTAGGGCTACCCTTCTCTAACTGA

>Glyma06g10020.5   sequence type=CDS   gene model=Glyma06g10020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGAGAACGAGGATAAAGATAAAGAAAATCGACAACATAACGGCGAGGCAGGTAACATTTTCTAAGAGGAGGCGAGGGCTATTCAAGAAAGCTGAAGAGCTTTCTGTGCTATGCGATGCTGAGGTTGGTCTCATTGTTTTCTCATCTACCGGGAAGCTCTTTGATTATAGCAGCTCCAGTATGAATGACATAGTTACAAAGTACAGTACGCATTCCCATGGCATCAACAAATTGGATAAGCCATCACTAGAACTGCAGCTAGAAGCTAGCAATAGCGCCAAATTGAGTAAGGAAATTGCAGATAGAACCCAAGAATTAAGTTGGTTGAAAGGCGACGATCTTCAAGGACTAGGTCTAAATGAGTTGCAGCAACTGGAGAAAACACTTGAAATAGGACTCGATCGCGTGACTGACATAAAGGAAAATCAGATAATGAGCCAGATTTCTGAACTTCAGAAAAAGCTAGCGGAGAAGGAGAAGGAGGCTATGCTGTGTAAGGCAAAAATTCCTTTCATGGTGGACTCAGATAAGGGAATAATGCAGGAAGAAGGTGTCTCGTTAGATTCTACAAATAACATTAGTAGTTGCATCAGTGATCCTCCTCTCGAGGATGGTTCCTCGGACATATCTCTTACGTTAGGGCTACCCTTCTCTAACTGA
Predicted protein sequences of Glyma06g10020
>Glyma06g10020.2   sequence type=predicted peptide   gene model=Glyma06g10020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTRTRIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGLIVFSSTGKLFDYSSSSMNDIVTKYSTHSHGINKLDKPSLELQLEASNSAKLSKEIADRTQELSWLKGDDLQGLGLNELQQLEKTLEIGLDRVTDIKENQIMSQISELQKKGILLEEENKHLTKKLAEKEKEAMLCKAKIPFMVDSDKGIMQEEGVSLDSTNNISSCISDPPLEDGSSDISLTLGLPFSN*

>Glyma06g10020.3   sequence type=predicted peptide   gene model=Glyma06g10020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTRTRIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGLIVFSSTGKLFDYSSSSMNDIVTKYSTHSHGINKLDKPSLELQLEASNSAKLSKEIADRTQELSWLKGDDLQGLGLNELQQLEKTLEIGLDRVTDIKENQIMSQISELQKKGILLEEENKHLTKKLAEKEKEAMLCKAKIPFMVDSDKGIMQEEGVSLDSTNNISSCISDPPLEDGSSDISLTLGLPFSN*

>Glyma06g10020.4   sequence type=predicted peptide   gene model=Glyma06g10020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTRTRIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGLIVFSSTGKLFDYSSSSMNDIVTKYSTHSHGINKLDKPSLELQLEASNSAKLSKEIADRTQELSWLKGDDLQGLGLNELQQLEKTLEIGLDRVTDIKENQIMSQISELQKKGILLEEENKHLTKKLAEKEKEAMLCKAKIPFMVDSDKGIMQEEGVSLDSTNNISSCISDPPLEDGSSDISLTLGLPFSN*

>Glyma06g10020.5   sequence type=predicted peptide   gene model=Glyma06g10020   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTRTRIKIKKIDNITARQVTFSKRRRGLFKKAEELSVLCDAEVGLIVFSSTGKLFDYSSSSMNDIVTKYSTHSHGINKLDKPSLELQLEASNSAKLSKEIADRTQELSWLKGDDLQGLGLNELQQLEKTLEIGLDRVTDIKENQIMSQISELQKKLAEKEKEAMLCKAKIPFMVDSDKGIMQEEGVSLDSTNNISSCISDPPLEDGSSDISLTLGLPFSN*






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