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Report for Sequence Feature Glyma06g10000

Feature Type:gene_model
Chromosome:Gm06
Start:7536402
stop:7540291
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g10000
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G49970AT Annotation by Michelle Graham. TAIR10: pyridoxin (pyrodoxamine) 5'-phosphate oxidase | chr5:20329213-20332900 FORWARD LENGTH=530 SoyBaseE_val: 0ISS
GO:0008615GO-bp Annotation by Michelle Graham. GO Biological Process: pyridoxine biosynthetic process SoyBaseN/AISS
GO:0019761GO-bp Annotation by Michelle Graham. GO Biological Process: glucosinolate biosynthetic process SoyBaseN/AISS
GO:0042817GO-bp Annotation by Michelle Graham. GO Biological Process: pyridoxal metabolic process SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0005576GO-cc Annotation by Michelle Graham. GO Cellular Compartment: extracellular region SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0004733GO-mf Annotation by Michelle Graham. GO Molecular Function: pyridoxamine-phosphate oxidase activity SoyBaseN/AISS
GO:0010181GO-mf Annotation by Michelle Graham. GO Molecular Function: FMN binding SoyBaseN/AISS
GO:0016491GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity SoyBaseN/AISS
GO:0016638GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on the CH-NH2 group of donors SoyBaseN/AISS
KOG2586 KOG Pyridoxamine-phosphate oxidase JGI ISS
PTHR13232Panther N-TERMINAL YJEF RELATED JGI ISS
PTHR13232:SF7Panther gb def: y18d10a.3.p [caenorhabditis elegans] JGI ISS
PF01243PFAM Pyridoxamine 5'-phosphate oxidase JGI ISS
PF03853PFAM YjeF-related protein N-terminus JGI ISS
UniRef100_I1JV56UniRef Annotation by Michelle Graham. Most informative UniRef hit: NAD(P)H-hydrate epimerase n=1 Tax=Glycine max RepID=I1JV56_SOYBN SoyBaseE_val: 0ISS
UniRef100_I1K9P7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9P7_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g10000
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g10000
ParalogEvidenceComments
Glyma04g09950 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g10000 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g095500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g10000
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g10000
>Glyma06g10000.2   sequence type=CDS   gene model=Glyma06g10000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACATGTCTATGCCTTACCCATTCAATCACTCAAACTCATAACCATAACCATAACCTTCCACACGCTACTACTACCTTCTCTTCTTCTCTCCATAACCGTAACCCCCTCTTTCAATTATTCTCCGTAAGTAACCAATTCCCTCTTCTATCTCGCGCTTTGTTTCAGAGTATTATTCTCCGACCTCGAATTCGACCATTTTCCACCAACTTAACTGCTTCTTATTCTTCTTCTGCCTTCGCCCAAATCATGGCGAATTTCGACGCTGATTCCGTCACTTACCTTACGCAGCGAGATGCCGCGGAGATCGACGAGACACTCATGGGTCCACTTGGCTTCAGCGTTGACCAGCTCATGGAATTGGATGTTTTGAGCGTCGCCACTTCCATTTCTGAGGTTTACAAACCATGTGAGCATAGTCGTGTTCTTACTATTTGTGGTCCTGGTAACAATGGCGGTGATGGTCTCGTAGCTGCTCGGCACCTGCATCACTTTGGTTATAAGCCCTTTGTCTGTTACCCAAAGCGTACCCCTAAGCCTCTCTATGCTGGGTTAGTCACTCAGCTTGAAGCACTGTCGATCCCATTCTTGTCAGTGGAAGAACTACCATCAGATCTTTCAAATGACTTTGACGTTGTCATAGATGCAATGTTTGGATTCTCATTTCATGGTTCTCCAAGGCCTCCTTTTGATGATTTGATCCAGAGACTAGTCTCGTTACATAATAATAATAATCAAATTGGCCAAAAAAGATCAGTTATAGTCTCTGTAGATATTCCCTCTGGGTGGCATGTTGAAGAGGGAGATGTTGATGGTACAGGCATTAAACCTGATATGTTGAAGTTTTGTGGTCCTCACCACTTTCTAGGAGGTAGATTTGTCCCACCTGCTATTGCAGAAAAATATAAGCTTATACTTCCACCATATCCAGGAACATCCATGTGTGTTCAAATTGGAAAGCCTCCACAAATTGATATCTCAGCTCTAAGAGAGAACTATATCTCTCCAGAATTTCTTGAAGAGCAGGTCGAGGTTGACCCTATTAATCAGTTTCACAAATGGTTTGATGATGCATTGGCTGCTGGTTTGAAGGAACCAAATGCTATGGCCTTGTCAACTGTAGGGAAGGATGGAAAACCCTCATCAAGAATGGTATTGCTAAAAGGCTTGGATAAGGACAGATTTGTGTGTCAAAAGGCATGTGAATTATCTGAAAATCCACGTGCATCTCTTCTTTTTTACTGGGATGGTTTAAACCGGCAGGTACGGGTGGAAGGGCCTGTTCAGAAAGTCTCTGATGAGGAATCAGAACAGTATTTCCATAGCCGTCCTAGAGGAAATACTGTAGTGCATGTTCTTTATCAGGAGTACAAAGAGCTGGAAGAAAAATACCTGATGGGTAAAAGTTTGATCCCTAAACCTAAGAACTGGGGAGGATATAGACTAACACCACAACTTTTCGAGTTTTGA
Predicted protein sequences of Glyma06g10000
>Glyma06g10000.2   sequence type=predicted peptide   gene model=Glyma06g10000   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTCLCLTHSITQTHNHNHNLPHATTTFSSSLHNRNPLFQLFSVSNQFPLLSRALFQSIILRPRIRPFSTNLTASYSSSAFAQIMANFDADSVTYLTQRDAAEIDETLMGPLGFSVDQLMELDVLSVATSISEVYKPCEHSRVLTICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTPKPLYAGLVTQLEALSIPFLSVEELPSDLSNDFDVVIDAMFGFSFHGSPRPPFDDLIQRLVSLHNNNNQIGQKRSVIVSVDIPSGWHVEEGDVDGTGIKPDMLKFCGPHHFLGGRFVPPAIAEKYKLILPPYPGTSMCVQIGKPPQIDISALRENYISPEFLEEQVEVDPINQFHKWFDDALAAGLKEPNAMALSTVGKDGKPSSRMVLLKGLDKDRFVCQKACELSENPRASLLFYWDGLNRQVRVEGPVQKVSDEESEQYFHSRPRGNTVVHVLYQEYKELEEKYLMGKSLIPKPKNWGGYRLTPQLFEF*






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