SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT5G10940 | AT | Annotation by Michelle Graham. TAIR10: transducin family protein / WD-40 repeat family protein | chr5:3448890-3454127 REVERSE LENGTH=754 | SoyBase | E_val: 0 | ISS |
| GO:0000956 | GO-bp | Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process | SoyBase | N/A | ISS |
| GO:0006346 | GO-bp | Annotation by Michelle Graham. GO Biological Process: methylation-dependent chromatin silencing | SoyBase | N/A | ISS |
| GO:0007062 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sister chromatid cohesion | SoyBase | N/A | ISS |
| GO:0008150 | GO-bp | Annotation by Michelle Graham. GO Biological Process: biological process | SoyBase | N/A | ISS |
| GO:0009630 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gravitropism | SoyBase | N/A | ISS |
| GO:0010413 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process | SoyBase | N/A | ISS |
| GO:0016246 | GO-bp | Annotation by Michelle Graham. GO Biological Process: RNA interference | SoyBase | N/A | ISS |
| GO:0031048 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing by small RNA | SoyBase | N/A | ISS |
| GO:0045132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: meiotic chromosome segregation | SoyBase | N/A | ISS |
| GO:0045492 | GO-bp | Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0009506 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasmodesma | SoyBase | N/A | ISS |
| GO:0080008 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| KOG1310 | KOG | WD40 repeat protein | JGI | ISS | |
| PTHR15574 | Panther | WD REPEAT DOMAIN-CONTAINING FAMILY | JGI | ISS | |
| PTHR15574:SF6 | Panther | gb def: putative protein [arabidopsis thaliana] | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_G7J574 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DDB1-and CUL4-associated factor n=1 Tax=Medicago truncatula RepID=G7J574_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K9P1 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1K9P1_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g09930 not represented in the dataset |
Glyma06g09930 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g09890 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g094900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g09930.1 sequence type=CDS gene model=Glyma06g09930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGACTCCGTTCCGTTTCGCGATGGTAACATACACACCATTCTCGACTCCCGTTATCTTCACTCTCCACTGGATGTTAATCATAGTTTGCACACTCATTCCTCGCTGATTCGGAGGCTTTCTCAAGAAAGGGAGTTAGAGGGCCACACTGGCTGTGTCAATGCGGTGGCTTGGAATTCCAAAGGTTCGTTACTGATATCTGGATCAGATGATCAACGGATCAATATTTGGAGCTATTCTGGCTGGAAACTTTTACATTCAATTGACACAGGACATACAGCAAATATATTCTGTACTAAGTTTATACCAGAAACTTCTGATGAGCTTGTAGCCTCTGGAGCTGGAGATGCTGAAGTCCGGTTATTCAATTTGTCTCGCTTAAATGGGAGTGGATTTAGTGACAATGCCATCATTGCTCCATCTGCATATTATCAATGCCACACTCGAAGAGTCAAGAAATTGGCTGTTGAAAATGGAAACCCCAATGTAGTATGGAGTGCTAGTGAAGATGGGACTCTAAGGCAACATGATTTTCGGGAAGGCACCTCTTGTCCTCCAGCTGGATCTTCACACCAAGAGTGTCGAAATATTCTTCTTGACTTAAGAAGTGGATCTAAAAGGTCGCTTGCTGATCCTCCTAAACAAGTCCTTGCTTTAAAATCTTGTGATATTAGTTCAACTAAACCACATTTGCTTCTTGTTGGTGGGAGTGACGCCTTCGCACGCTTATATGATAGAAGGATGCTTCCGCCTCTTAGCTCATGTCAGAAAAGAATGTCTCCACCTCCTTGTGTTAATTATTTCTGTCCAATGCATCTTTCTGATCGTGGACATCCAAGCTTGCACTTAACTCATGTTACATTCAGTCCTGATGGGCACGAGGTTCTCCTCAGCTATAGTGGAGAGCACGTTTACTTGATGAATGTAAATCATGCTGGAGTGAAGGAGATGCAATATACTTCAGGAGATGAATCAAAGCTGATGACATACTCTCCGACAATTAATGGGTCAGAGATGCAGCCTTGTGTATCTAATGTCTTCCCAAATAGATTTCCTATTAAAAAGAACATTGCTGCAAAGCTTGACAAGTGCAGGAAACAAATAAAATATGCTAAGAAATCGTTGGACAATGGGATACCCTATTATGGAATTGATGCATGTAATGAGGTTTTGAATGGCTATAGCCATATTATTGGGCCTGCACTGAAACATGAATGCTTGTGTACTCGTGCTGCACTATTGGTCAAGAGGAAGTGGAAAAACGATGCTCATATGGCTATAAGAGACTGCTATGCTGCTAGGATAATTGATAATTCCTCTTACAAAGCACTATACTATATGTCAGAAGCATTGTCACAGTTGGGTAGACATGAAGATGCTTTGGAGTTTGCTGTTGCTTCCCATTCTTTGGCCCCATCCAAATCTGAAGTTGCAGAAAGAGTAGCGAATGTGAAGAGGGACATTGCTTTAGCTGAAGCTGAAAAAAATAGTCAGACCAATGATGGGGCATCAAGGTTTGATAGTAGGGGTGGAAGAATATTATCATTAAGCGACATACTCTATTGTCCTGAGTCTAATAGTGATGATCCACATGATGGTTCAAGATCAGAGAGGGATGATTCTGATTACGATGACGAATTGGAGTTGGACTTTGAAACATCAATATCTGGTGATGAGGGACATGATCTTGAATCAAATATTCTTCATGGAAATTTAAATCTTAGAATTCATGGGAGAGGTGACTCCAGAGACAATGCTGATGCAAGTGGCTCATGTGAATCACCTTCATCATCGTCACAGAACAGTAGAACTTCTTATCAGCCTGAACCAGCTGTTGATATGAAACAGAGATTTGTTGGCCACTGCAATATTGGGACTGACATAAAACAAGCCAGTTTTCTTGGTCAAAGAGGTGAATATGTTGCTAGTGGAAGTGATGATGGCAGATGGTTTATTTGGGAAAAGTGTACGGGCAGACTAATAAAAATGCTGAGTGGTGATGAATCTGTTGTAAATTGTGTACAATGCCATCCATTTGATTTTGTTGTTGCAACCAGTGGGATTGATAGCACAATAAAGATCTGGACTCCAACTGCTCCTGTTCCATCTTCTGTAGCTGGTGGTTCAGCAGGACCAGAAACTGGTGATGTGTTGGTTGCTATGGAGAGCAATCAACAAAAACTATCCCGTAGCCATAATTCTATCTTGCCCTTATTGGAATCATTTAGGAGGCAGGATTTTCCTGAAGGGTCGTTACGCTTGCATCCATTTGAATGTGCTCAAAGCTAA
>Glyma06g09930.1 sequence type=predicted peptide gene model=Glyma06g09930 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MDSVPFRDGNIHTILDSRYLHSPLDVNHSLHTHSSLIRRLSQERELEGHTGCVNAVAWNSKGSLLISGSDDQRINIWSYSGWKLLHSIDTGHTANIFCTKFIPETSDELVASGAGDAEVRLFNLSRLNGSGFSDNAIIAPSAYYQCHTRRVKKLAVENGNPNVVWSASEDGTLRQHDFREGTSCPPAGSSHQECRNILLDLRSGSKRSLADPPKQVLALKSCDISSTKPHLLLVGGSDAFARLYDRRMLPPLSSCQKRMSPPPCVNYFCPMHLSDRGHPSLHLTHVTFSPDGHEVLLSYSGEHVYLMNVNHAGVKEMQYTSGDESKLMTYSPTINGSEMQPCVSNVFPNRFPIKKNIAAKLDKCRKQIKYAKKSLDNGIPYYGIDACNEVLNGYSHIIGPALKHECLCTRAALLVKRKWKNDAHMAIRDCYAARIIDNSSYKALYYMSEALSQLGRHEDALEFAVASHSLAPSKSEVAERVANVKRDIALAEAEKNSQTNDGASRFDSRGGRILSLSDILYCPESNSDDPHDGSRSERDDSDYDDELELDFETSISGDEGHDLESNILHGNLNLRIHGRGDSRDNADASGSCESPSSSSQNSRTSYQPEPAVDMKQRFVGHCNIGTDIKQASFLGQRGEYVASGSDDGRWFIWEKCTGRLIKMLSGDESVVNCVQCHPFDFVVATSGIDSTIKIWTPTAPVPSSVAGGSAGPETGDVLVAMESNQQKLSRSHNSILPLLESFRRQDFPEGSLRLHPFECAQS*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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