Glyma06g09900 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g09900

Feature Type:	gene_model
Chromosome:	Gm06
Start:	7430451
stop:	7433735
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g09900

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G33740	AT	Annotation by Michelle Graham. TAIR10: Nitrogen regulatory PII-like, alpha/beta \| chr2:14269590-14271523 FORWARD LENGTH=182	SoyBase	E_val: 3.00E-71	ISS
GO:0010038	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to metal ion	SoyBase	N/A	ISS
GO:0048573	GO-bp	Annotation by Michelle Graham. GO Biological Process: photoperiodism, flowering	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0005507	GO-mf	Annotation by Michelle Graham. GO Molecular Function: copper ion binding	SoyBase	N/A	ISS
KOG3338	KOG	Divalent cation tolerance-related protein	JGI		ISS
PTHR23419	Panther	DIVALENT CATION TOLERANCE CUTA-RELATED	JGI		ISS
PF03091	PFAM	CutA1 divalent ion tolerance protein	JGI		ISS
UniRef100_I1K9N5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K9N5_SOYBN	SoyBase	E_val: 8.00E-119	ISS
UniRef100_P93009	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Protein CutA, chloroplastic n=1 Tax=Arabidopsis thaliana RepID=CUTA_ARATH	SoyBase	E_val: 1.00E-68	ISS

Expression Patterns of Glyma06g09900

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g09900

Paralog	Evidence	Comments
Glyma04g09830	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g09900 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g094500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g09900

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g09900

Limit To All Plant Sequences

>Glyma06g09900.2   sequence type=transcript   gene model=Glyma06g09900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAAGGAAGAACGCATCAAGGAAAGGAGCAGGAGGGAGCTTGATAGGGACGCGCAGCAGGATATAAGAACTTGCCAAAATGGCTTCCATAATATGCTCCTCCTCCACGCTACGACGTCGTTTGCCCCTCGTCGGCGCGTTTTGCATGCTCAGTTTGGGACTCTCCAATCTCTACACACCCCTCAAAACGGGGTGCGTTCAATCTCTCTTACGGTACTCATGACATAACCCACTTTCTCTTGATTTCTCTCTCTGTTGAAGAATTCTATTCAATTTCCTCTGTTTCAGATCCAAGTTGGGTATTCGAACCCAGTCCTGCATCAGAATGGAAGGGAGTAACACCACCGTGCCCAGCATTGTTGTCTATGTCACTGTTCCCAACAAAGATGCAGGTAAGAAGTTGGCTGAAAGCATCGTCAAAGAGAAGCTTGCTGCTTGTGTCAACAGGGTACCGGGTATTGAATCGGTGTACCAGTGGGAGGGAAAGATCCAAACTGATTCTGAGGAACTTCTTATAATCAAGACTAGGCAATCCCTTCTGGAGGCACTGACAGAGCATGTCAAGGCTAATCATGAATATGATGTGCCAGAGGTGATCTCCTTACCCATCACCGGGGGCAATCTTAAATATTTAGAGTGGATTAAAGAGAGCACAAGGGACTGACTATCAAGTTTATAGCCTGAGGTGTGGTTTCCAGAGTTATTCTGCTGGTGTGTTAAATAAAGTCAGTTTGTCATCTATGTAAGGCAATGAGAATATTATGTAGAGGATGATGATCGGTCTTGTATTACTGCTAGTGGATGTAATAGGTTGACTATGATTATATGTGAATAGACCTTTTCTTTGTGATTTTATGCACATTTGGCATTTTGTTTCTTATTTTGTCTGATTTGTGTGTTTCCTGTACCATCCATCTATCTGCTTTCGGGTTTAAGAATATTTTTCTTTT

>Glyma06g09900.3   sequence type=transcript   gene model=Glyma06g09900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAAGGAAGAACGCATCAAGGAAAGGAGCAGGAGGGAGCTTGATAGGGACGCGCAGCAGGATATAAGAACTTGCCAAAATGGCTTCCATAATATGCTCCTCCTCCACGCTACGACGTCGTTTGCCCCTCGTCGGCGCGTTTTGCATGCTCAGTTTGGGACTCTCCAATCTCTACACACCCCTCAAAACGGGGTGCGTTCAATCTCTCTTACGATCCAAGTTGGGTATTCGAACCCAGTCCTGCATCAGAATGGAAGGGAGTAACACCACCGTGCCCAGCATTGTTGTCTATGTCACTGTTCCCAACAAAGATGCAGGTAAGAAGTTGGCTGAAAGCATCGTCAAAGAGAAGCTTGCTGCTTGTGTCAACAGGGTACCGGGTATTGAATCGGTGTACCAGTGGGAGGGAAAGATCCAAACTGATTCTGAGGAACTTCTTATAATCAAGACTAGGCAATCCCTTCTGGAGGCACTGACAGAGCATGTCAAGGCTAATCATGAATATGAAGGTGATCTCCTTACCCATCACCGGGGGCAATCTTAAATATTTAGAGTGGATTAAAGAGAGCACAAGGGACTGACTATCAAGTTTATAGCCTGAGGTGTGGTTTCCAGAGTTATTCTGCTGGTGTGTTAAATAAAGTCAGTTTGTCATCTATGTAAGGCAATGAGAATATTATGTAGAGGATGATGATCGGTCTTGTATTACTGCTAGTGGATGTAATAGGTTGACTATGATTATATGTGAATAGACCTTTTCTTTGTGATTTTATGCACATTTGGCATTTTGTTTCTTATTTTGTCTGATTTGTGTGTTTCCTGTACCATCCATCTATCTGCTTTCGGGTTTAAGAATATTTTTCTTTT

>Glyma06g09900.4   sequence type=transcript   gene model=Glyma06g09900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAAGGAAGAACGCATCAAGGAAAGGAGCAGGAGGGAGCTTGATAGGGACGCGCAGCAGGATATAAGAACTTGCCAAAATGGCTTCCATAATATGCTCCTCCTCCACGCTACGACGTCGTTTGCCCCTCGTCGGCGCGTTTTGCATGCTCAGTTTGGGACTCTCCAATCTCTACACACCCCTCAAAACGGGGTGCGTTCAATCTCTCTTACGATCCAAGTTGGGTATTCGAACCCAGTCCTGCATCAGAATGGAAGGGAGTAACACCACCGTGCCCAGCATTGTTGTCTATGTCACTGTTCCCAACAAAGATGCAGGTAAGAAGTTGGCTGAAAGCATCGTCAAAGAGAAGCTTGCTGCTTGTGTCAACAGGGTACCGGGTATTGAATCGGTGTACCAGTGGGAGGGAAAGATCCAAACTGATTCTGAGGAACTTCTTATAATCAAGACTAGGCAATCCCTTCTGGAGGCACTGACAGAGCATGTCAAGGCTAATCATGAATATGAGTAAGGCCAATACATCTAGTAAATAGTCTGGCCATAAAATTTAACTTTTCTTCATAGAGTGTGAAGTTTGAGTAGCATTTACCATTTGATCCTAAAAGAAAGCTTGGTGAAAGGAATTCTTAAACCATGTAAATGAACTGAAGTGTAATTATGGAAAGCTATAGTGTGCATTCACATGCTTCTTACCTCTTGTCTTTTTTTAGTGTGCCAGAGGTGATCTCCTTACCCATCACCGGGGGCAATCTTAAATATTTAGAGTGGATTAAAGAGAGCACAAGGGACTGACTATCAAGTTTATAGCCTGAGGTGTGGTTTCCAGAGTTATTCTGCTGGTGTGTTAAATAAAGTCAGTTTGTCATCTATGTAAGGCAATGAGAATATTATGTAGAGGATGATGATCGGTCTTGTATTACTGCTAGTGGATGTAATAGGTTGACTATGATTATATGTGAATAGACCTTTTCTTTGTGATTTTATGCACATTTGGCATTTTGTTTCTTATTTTGTCTGATTTGTGTGTTTCCTGTACCATCCATCTATCTGCTTTCGGGTTTAAGAATATTTTTCTTTT

Coding sequences of Glyma06g09900

Limit To All Plant Sequences

>Glyma06g09900.1   sequence type=CDS   gene model=Glyma06g09900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCATAATATGCTCCTCCTCCACGCTACGACGTCGTTTGCCCCTCGTCGGCGCGTTTTGCATGCTCAGTTTGGGACTCTCCAATCTCTACACACCCCTCAAAACGGGGTGCGTTCAATCTCTCTTACGATCCAAGTTGGGTATTCGAACCCAGTCCTGCATCAGAATGGAAGGGAGTAACACCACCGTGCCCAGCATTGTTGTCTATGTCACTGTTCCCAACAAAGATGCAGGTAAGAAGTTGGCTGAAAGCATCGTCAAAGAGAAGCTTGCTGCTTGTGTCAACAGGGTACCGGGTATTGAATCGGTGTACCAGTGGGAGGGAAAGATCCAAACTGATTCTGAGGAACTTCTTATAATCAAGACTAGGCAATCCCTTCTGGAGGCACTGACAGAGCATGTCAAGGCTAATCATGAATATGATGTGCCAGAGGTGATCTCCTTACCCATCACCGGGGGCAATCTTAAATATTTAGAGTGGATTAAAGAGAGCACAAGGGACTGA

>Glyma06g09900.2   sequence type=CDS   gene model=Glyma06g09900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGGAGTAACACCACCGTGCCCAGCATTGTTGTCTATGTCACTGTTCCCAACAAAGATGCAGGTAAGAAGTTGGCTGAAAGCATCGTCAAAGAGAAGCTTGCTGCTTGTGTCAACAGGGTACCGGGTATTGAATCGGTGTACCAGTGGGAGGGAAAGATCCAAACTGATTCTGAGGAACTTCTTATAATCAAGACTAGGCAATCCCTTCTGGAGGCACTGACAGAGCATGTCAAGGCTAATCATGAATATGATGTGCCAGAGGTGATCTCCTTACCCATCACCGGGGGCAATCTTAAATATTTAGAGTGGATTAAAGAGAGCACAAGGGACTGA

>Glyma06g09900.3   sequence type=CDS   gene model=Glyma06g09900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCATAATATGCTCCTCCTCCACGCTACGACGTCGTTTGCCCCTCGTCGGCGCGTTTTGCATGCTCAGTTTGGGACTCTCCAATCTCTACACACCCCTCAAAACGGGGTGCGTTCAATCTCTCTTACGATCCAAGTTGGGTATTCGAACCCAGTCCTGCATCAGAATGGAAGGGAGTAACACCACCGTGCCCAGCATTGTTGTCTATGTCACTGTTCCCAACAAAGATGCAGGTAAGAAGTTGGCTGAAAGCATCGTCAAAGAGAAGCTTGCTGCTTGTGTCAACAGGGTACCGGGTATTGAATCGGTGTACCAGTGGGAGGGAAAGATCCAAACTGATTCTGAGGAACTTCTTATAATCAAGACTAGGCAATCCCTTCTGGAGGCACTGACAGAGCATGTCAAGGCTAATCATGAATATGAAGGTGATCTCCTTACCCATCACCGGGGGCAATCTTAA

>Glyma06g09900.4   sequence type=CDS   gene model=Glyma06g09900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTCCATAATATGCTCCTCCTCCACGCTACGACGTCGTTTGCCCCTCGTCGGCGCGTTTTGCATGCTCAGTTTGGGACTCTCCAATCTCTACACACCCCTCAAAACGGGGTGCGTTCAATCTCTCTTACGATCCAAGTTGGGTATTCGAACCCAGTCCTGCATCAGAATGGAAGGGAGTAACACCACCGTGCCCAGCATTGTTGTCTATGTCACTGTTCCCAACAAAGATGCAGGTAAGAAGTTGGCTGAAAGCATCGTCAAAGAGAAGCTTGCTGCTTGTGTCAACAGGGTACCGGGTATTGAATCGGTGTACCAGTGGGAGGGAAAGATCCAAACTGATTCTGAGGAACTTCTTATAATCAAGACTAGGCAATCCCTTCTGGAGGCACTGACAGAGCATGTCAAGGCTAATCATGAATATGAGTAA

Predicted protein sequences of Glyma06g09900

Limit To All Plant Sequences

>Glyma06g09900.1   sequence type=predicted peptide   gene model=Glyma06g09900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASIICSSSTLRRRLPLVGAFCMLSLGLSNLYTPLKTGCVQSLLRSKLGIRTQSCIRMEGSNTTVPSIVVYVTVPNKDAGKKLAESIVKEKLAACVNRVPGIESVYQWEGKIQTDSEELLIIKTRQSLLEALTEHVKANHEYDVPEVISLPITGGNLKYLEWIKESTRD*

>Glyma06g09900.2   sequence type=predicted peptide   gene model=Glyma06g09900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGSNTTVPSIVVYVTVPNKDAGKKLAESIVKEKLAACVNRVPGIESVYQWEGKIQTDSEELLIIKTRQSLLEALTEHVKANHEYDVPEVISLPITGGNLKYLEWIKESTRD*

>Glyma06g09900.3   sequence type=predicted peptide   gene model=Glyma06g09900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASIICSSSTLRRRLPLVGAFCMLSLGLSNLYTPLKTGCVQSLLRSKLGIRTQSCIRMEGSNTTVPSIVVYVTVPNKDAGKKLAESIVKEKLAACVNRVPGIESVYQWEGKIQTDSEELLIIKTRQSLLEALTEHVKANHEYEGDLLTHHRGQS*

>Glyma06g09900.4   sequence type=predicted peptide   gene model=Glyma06g09900   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASIICSSSTLRRRLPLVGAFCMLSLGLSNLYTPLKTGCVQSLLRSKLGIRTQSCIRMEGSNTTVPSIVVYVTVPNKDAGKKLAESIVKEKLAACVNRVPGIESVYQWEGKIQTDSEELLIIKTRQSLLEALTEHVKANHEYE*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain