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Report for Sequence Feature Glyma06g09890

Feature Type:gene_model
Chromosome:Gm06
Start:7426229
stop:7428663
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g09890
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G10450AT Annotation by Michelle Graham. TAIR10: G-box regulating factor 6 | chr5:3284452-3286261 REVERSE LENGTH=248 SoyBaseE_val: 7.00E-155ISS
GO:0006094GO-bp Annotation by Michelle Graham. GO Biological Process: gluconeogenesis SoyBaseN/AISS
GO:0006096GO-bp Annotation by Michelle Graham. GO Biological Process: glycolysis SoyBaseN/AISS
GO:0009407GO-bp Annotation by Michelle Graham. GO Biological Process: toxin catabolic process SoyBaseN/AISS
GO:0009651GO-bp Annotation by Michelle Graham. GO Biological Process: response to salt stress SoyBaseN/AISS
GO:0009742GO-bp Annotation by Michelle Graham. GO Biological Process: brassinosteroid mediated signaling pathway SoyBaseN/AISS
GO:0016310GO-bp Annotation by Michelle Graham. GO Biological Process: phosphorylation SoyBaseN/AISS
GO:0032880GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of protein localization SoyBaseN/AISS
GO:0042742GO-bp Annotation by Michelle Graham. GO Biological Process: defense response to bacterium SoyBaseN/AISS
GO:0046686GO-bp Annotation by Michelle Graham. GO Biological Process: response to cadmium ion SoyBaseN/AISS
GO:0005618GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cell wall SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005737GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm SoyBaseN/AISS
GO:0005829GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cytosol SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0019904GO-mf Annotation by Michelle Graham. GO Molecular Function: protein domain specific binding SoyBaseN/AISS
GO:0045309GO-mf Annotation by Michelle Graham. GO Molecular Function: protein phosphorylated amino acid binding SoyBaseN/AISS
KOG0841 KOG Multifunctional chaperone (14-3-3 family) JGI ISS
PTHR18860Panther 14-3-3 JGI ISS
PF00244PFAM 14-3-3 protein JGI ISS
UniRef100_Q96451UniRef Annotation by Michelle Graham. Most informative UniRef hit: 14-3-3-like protein B (Fragment) n=1 Tax=Glycine max RepID=1433B_SOYBN SoyBaseE_val: 1.00E-173ISS
UniRef100_UPI00018C707CUniRef Annotation by Michelle Graham. Best UniRef hit: UPI00018C707C related cluster n=1 Tax=unknown RepID=UPI00018C707C SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g09890
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g09890
ParalogEvidenceComments
Glyma04g09820 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g09890 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g094400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g09890
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g09890
>Glyma06g09890.2   sequence type=CDS   gene model=Glyma06g09890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTATCTCAATCTTTTTCCAAGTGTTTTTTTATACATAAAATCCATTCATTCGGTTTCGTTCCACTCCCCCCAATAGCCGCTATTCTACTCGCAAGCAAATCAGAACAAGAGAAGAGAATGGCAGGAGCAGAGGGGCTAAACAGAGAACAGTACGTGTACCTTGCGAAGCTGTCGGAGCAGGCGGAGCGGTACGAAGAGATGGTGGAGTTCATGCAGAAGGTGGTGGTGGGGTGGACGCCGGCGTCGGAGCTCACGGTGGAGGAGCGCAACCTCCTCTCGGTGGCCTACAAGAACGTGATCGGGTCTCTGCGTGCCGCGTGGCGCATCGTGTCCTCCATCGAACAGAAGGAGGAAGGGCGCAAGAACGACGACCACGTGTCCCTCGTGAAGCACTACAGATCCAAGGTCGAGAACGAGCTCACGCAGGTCTGCGCCAGCATCCTCAACCTCCTCGACTCCAACCTCGTACCCTCCGTCTTCGCCAGCGAGTCCAAGGTCTTCTACTTGAAGATGAAGGGCGATTACCACCGCTATCTCGCAGAGTTTAAGGTTGGGGATGAGAGAAAAACCGCTGCTGAGGATACCATGTTGTCTTACAAGGCTGCCCAGGACATTGCTTCTGGGGATCTTCCCCCTACTCACCCCATCAGATTGGGTCTCGCTCTCAACTTCTCCGTCTTCTACTATGAAATCCTCAACCAGTCTGACAAAGCGTGTGCCATGGCTAAACAGGCTTTTGAGGAAGCAATTGCTGAGCTGGACACCTTGGGAGAAGAATCCTACAAAGACAGCACGCTCATAATGCAGCTTTTAAGAGACAACCTCACCCTTTGGACTTCTGATGTCCAGGACCAGCTAGATGAGCCCTGA
Predicted protein sequences of Glyma06g09890
>Glyma06g09890.2   sequence type=predicted peptide   gene model=Glyma06g09890   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLSQSFSKCFFIHKIHSFGFVPLPPIAAILLASKSEQEKRMAGAEGLNREQYVYLAKLSEQAERYEEMVEFMQKVVVGWTPASELTVEERNLLSVAYKNVIGSLRAAWRIVSSIEQKEEGRKNDDHVSLVKHYRSKVENELTQVCASILNLLDSNLVPSVFASESKVFYLKMKGDYHRYLAEFKVGDERKTAAEDTMLSYKAAQDIASGDLPPTHPIRLGLALNFSVFYYEILNQSDKACAMAKQAFEEAIAELDTLGEESYKDSTLIMQLLRDNLTLWTSDVQDQLDEP*






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