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Report for Sequence Feature Glyma06g09836

Feature Type:gene_model
Chromosome:Gm06
Start:7382272
stop:7382979
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g09836
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G58120AT Annotation by Michelle Graham. TAIR10: BEST Arabidopsis thaliana protein match is: methyltransferases (TAIR:AT5G01710.1); Has 93 Blast hits to 93 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 92; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:21520962-21522224 FORWARD LENGTH=420 SoyBaseE_val: 9.00E-86ISS
GO:0009860GO-bp Annotation by Michelle Graham. GO Biological Process: pollen tube growth SoyBaseN/AISS
UniRef100_Q9M005UniRef Annotation by Michelle Graham. Most informative UniRef hit: Methyltransferase n=1 Tax=Arabidopsis thaliana RepID=Q9M005_ARATH SoyBaseE_val: 7.00E-18ISS
UniRef100_UPI000233A614UniRef Annotation by Michelle Graham. Best UniRef hit: UPI000233A614 related cluster n=1 Tax=unknown RepID=UPI000233A614 SoyBaseE_val: 1.00E-171ISS

Expression Patterns of Glyma06g09836
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g09836 not represented in the dataset
Glyma06g09836 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g09836
ParalogEvidenceComments
Glyma04g09750 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g09836 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g093700 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g09836
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g09836
>Glyma06g09836.1   sequence type=CDS   gene model=Glyma06g09836   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCTGAATATTCCTTCAACACCGACCAGGTTCTGTCAATTCTATTTCGCGAATTGACCAACAACCAAGAGAAAATGGTTTTCCTCGGCAACAACGAGCCGAACCTGGTGGTGGCTGCGCCGAGGAAGCTATGCGGTTACATGCCGGAGGCGAAGAAAGTGGCGTTGCAGAAGCTCGAGGACGTGCTACTGGAGCCGCCAAGAGCGTCTTCAGGGAAGTCACGAAAGTACTTAAAACGCACGCGGTTCTTGCCGGATTTGATGAATGATTCTCTGGAGAAATACCCTCGCCGCGTTTTCATCGACGTGGGGGTGCCGGAGAAGGACGGTGGGAGTGGAATGGAGTGGTTTTCGAAGAATTACCCGACGAGGAACCAGAAGTTTGAGATGTATAACATAGAGACGGTGGCGGAGGAGTCGTCATCGTCGTCGTTGTCGCCGGGGAAGGAGCAAATAGAGATGTCGGATTGGGTTCGGAAGAACGTGAAGGAGGAGGAGTACGTGGTGATGAAAGCCGAGGCGGAAGTGGTAGAGGAGATGATGAAGAGCAAATCCATTGGGCTGGTGGACGAGCTTTTCTTGGAGTGTAAGCCAAAACGCGAGAACAGAAGCTCAGGGAATTCCAGCCGAAGGGCCTATTGGGAGTGCTTGGCTTTGTATGGCAAGTTAAGGGACGAGGGTGTTGCAGTGCACCAGTGGTGGGGTTAG
Predicted protein sequences of Glyma06g09836
>Glyma06g09836.1   sequence type=predicted peptide   gene model=Glyma06g09836   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPEYSFNTDQVLSILFRELTNNQEKMVFLGNNEPNLVVAAPRKLCGYMPEAKKVALQKLEDVLLEPPRASSGKSRKYLKRTRFLPDLMNDSLEKYPRRVFIDVGVPEKDGGSGMEWFSKNYPTRNQKFEMYNIETVAEESSSSSLSPGKEQIEMSDWVRKNVKEEEYVVMKAEAEVVEEMMKSKSIGLVDELFLECKPKRENRSSGNSSRRAYWECLALYGKLRDEGVAVHQWWG*






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