Glyma06g09830 - SoyBase

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Report for Sequence Feature Glyma06g09830

Feature Type:	gene_model
Chromosome:	Gm06
Start:	7378690
stop:	7380655
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g09830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G09750	AT	Annotation by Michelle Graham. TAIR10: Eukaryotic aspartyl protease family protein \| chr1:3157541-3158960 FORWARD LENGTH=449	SoyBase	E_val: 3.00E-178	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0005618	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cell wall	SoyBase	N/A	ISS
GO:0009505	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plant-type cell wall	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0004190	GO-mf	Annotation by Michelle Graham. GO Molecular Function: aspartic-type endopeptidase activity	SoyBase	N/A	ISS
KOG1339	KOG	Aspartyl protease	JGI		ISS
PTHR13683	Panther	ASPARTYL PROTEASES	JGI		ISS
PTHR13683:SF98	Panther	CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED	JGI		ISS
PF00026	PFAM	Eukaryotic aspartyl protease	JGI		ISS
UniRef100_G7J557	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Aspartic proteinase nepenthesin-1 n=1 Tax=Medicago truncatula RepID=G7J557_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K9M9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9M9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g09830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g09830

Paralog	Evidence	Comments
Glyma04g09740	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g09830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g093600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g09830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g09830

Limit To All Plant Sequences

>Glyma06g09830.1   sequence type=CDS   gene model=Glyma06g09830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCATGGACACCAACCATTATATCCCCCCACCGAGTCACCAACCATGGACGTTAAGTTTGGCACCACATTAATAGTTATTTTCTCCGTAATGTGGCTCATGAGGGTGAATGCCATTGACCCTTGTGCCTCTCAACCGGATAATTCGGACCTCAACGTGATTCCCATCTACAGCAAATGCTCACCGTTCAAACCACCCAAGGCAGACACATGGGACAACAGAATTATAAACATGGCCTCAAAAGACCCAGTCCGAGTGAAATACTTGTCCACCTTAGTGAGTCAAAAGACAGTCTCCACGGCCCCAATCGCTTCGGGCCAGGCCTTCAACATCGGCAACTATGTGGTGAGGGTCAAATTGGGAACACCCGGTCAACTTTTGTTCATGGTCCTCGACACCAGCACTGACGAGGCCTTCGTACCCTGCTCGGGCTGCACTGGCTGCTCCGACACCACTTTCTCGCCCAAAGCCTCAACCAGTTACGGCCCATTAGACTGCTCCGTCCCCCAGTGCGGACAGGTCCGTGGGCTTTCTTGCCCCGCCACGGGAACCGGCGCGTGCTCCTTCAACCAATCCTACGCGGGCTCATCTTTCTCCGCCACCCTAGTCCAAGACGCATTAAGATTGGCAACTGATGTTATCCCCTACTACTCCTTCGGCTGCGTCAACGCCATCACCGGAGCCTCGGTCCCTGCCCAAGGGCTTTTGGGCCTTGGCCGAGGCCCGTTGTCCTTGCTCTCCCAATCCGGGTCAAATTACTCGGGCATATTCTCTTACTGTCTCCCCAGTTTCAAGTCCTACTACTTCTCCGGGTCGCTCAAGCTGGGGCCCGTGGGCCAGCCCAAGAGCATTCGTACCACTCCGCTTCTTCGCAGCCCGCACCGTCCTTCTCTTTACTACGTGAACTTCACCGGGATCAGCGTGGGGCGCGTCCTGGTACCCTTTCCCAGCGAGTATCTTGGGTTTAACCCGAACACTGGATCCGGAACCATAATTGATTCGGGCACGGTGATAACCCGGTTCGTGGAGCCCGTTTACAACGCGGTGAGGGAGGAGTTCAGGAAGCAGGTAGGGGGAACTACATTCACGAGCATTGGAGCTTTCGACACGTGTTTCGTGAAAACCTACGAAACGCTGGCGCCGCCAATTACGCTGCACTTCGAGGGGTTGGACCTGAAGCTGCCGTTGGAGAACAGCTTGATTCATAGCAGCGCGGGTTCGTTGGCGTGTCTTGCGATGGCGGCGGCACCCGACAATGTGAACTCGGTATTGAACGTCATTGCCAACTTTCAGCAACAGAACCTTAGGATTTTGTTTGATATCGTCAATAATAAAGTTGGCATAGCCCGTGAGGTTTGTAACTAG

Predicted protein sequences of Glyma06g09830

Limit To All Plant Sequences

>Glyma06g09830.1   sequence type=predicted peptide   gene model=Glyma06g09830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHGHQPLYPPTESPTMDVKFGTTLIVIFSVMWLMRVNAIDPCASQPDNSDLNVIPIYSKCSPFKPPKADTWDNRIINMASKDPVRVKYLSTLVSQKTVSTAPIASGQAFNIGNYVVRVKLGTPGQLLFMVLDTSTDEAFVPCSGCTGCSDTTFSPKASTSYGPLDCSVPQCGQVRGLSCPATGTGACSFNQSYAGSSFSATLVQDALRLATDVIPYYSFGCVNAITGASVPAQGLLGLGRGPLSLLSQSGSNYSGIFSYCLPSFKSYYFSGSLKLGPVGQPKSIRTTPLLRSPHRPSLYYVNFTGISVGRVLVPFPSEYLGFNPNTGSGTIIDSGTVITRFVEPVYNAVREEFRKQVGGTTFTSIGAFDTCFVKTYETLAPPITLHFEGLDLKLPLENSLIHSSAGSLACLAMAAAPDNVNSVLNVIANFQQQNLRILFDIVNNKVGIAREVCN*

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