Glyma06g09821 - SoyBase

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Report for Sequence Feature Glyma06g09821

Feature Type:	gene_model
Chromosome:	Gm06
Start:	7363792
stop:	7371851
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g09821

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G24560	AT	Annotation by Michelle Graham. TAIR10: ubiquitin-specific protease 16 \| chr4:12679493-12684528 REVERSE LENGTH=1008	SoyBase	E_val: 0	ISS
GO:0000956	GO-bp	Annotation by Michelle Graham. GO Biological Process: nuclear-transcribed mRNA catabolic process	SoyBase	N/A	ISS
GO:0006486	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein glycosylation	SoyBase	N/A	ISS
GO:0006487	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein N-linked glycosylation	SoyBase	N/A	ISS
GO:0006511	GO-bp	Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0009908	GO-bp	Annotation by Michelle Graham. GO Biological Process: flower development	SoyBase	N/A	ISS
GO:0048364	GO-bp	Annotation by Michelle Graham. GO Biological Process: root development	SoyBase	N/A	ISS
GO:0048366	GO-bp	Annotation by Michelle Graham. GO Biological Process: leaf development	SoyBase	N/A	ISS
GO:0048367	GO-bp	Annotation by Michelle Graham. GO Biological Process: shoot development	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0004221	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin thiolesterase activity	SoyBase	N/A	ISS
GO:0004843	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ubiquitin-specific protease activity	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
KOG1865	KOG	Ubiquitin carboxyl-terminal hydrolase	JGI		ISS
PTHR24006	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24006:SF250	Panther		JGI		ISS
PF00443	PFAM	Ubiquitin carboxyl-terminal hydrolase	JGI		ISS
PF01753	PFAM	MYND finger	JGI		ISS
UniRef100_G7J555	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin carboxyl-terminal hydrolase n=1 Tax=Medicago truncatula RepID=G7J555_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A613	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A613 related cluster n=1 Tax=unknown RepID=UPI000233A613	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g09821

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g09821 not represented in the dataset	Glyma06g09821 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g09821

Paralog	Evidence	Comments
Glyma04g09730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g09821 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g093500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g09821

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g09821

Limit To All Plant Sequences

>Glyma06g09821.1   sequence type=CDS   gene model=Glyma06g09821   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGTGTCACCGGGGATCTAGGGTTTTCGAGCCTGGTCCTTGTGGTGGTTTGTGTTGTGGTGGCGGTGATCGGGTTCGTTATTCGGCATAAATGGCAGGTTTCGGAGGCCAGGAAGGAGGAGATCAAGAGGCTTTTCATTTTGGCCGCGGAGGAAACTGCCAGGGCCGAGAAAGAGGCGTCCTATGAGTACGGCACGGCGGTTTCTGCCGCTCCGACCAATCTATGCGCTGTGTGTTATTTTCCCGCCACCGCGCGCTGCGCTCAGTGCAAATCCGTTCGCTACTGTTCTTTTGAATGCCAAACTGTTCATTGGCGTCAAGGTCACAAGTTAGAATGCCGTCCTCCCAGCACAACTCACCAGAGTGATGGTGCAACGAGTGATCTTGGCAGCAAGGTAGTAGAGCAAGGCTATTCTGGAATCCATGTTGGGAAGTCTGAAAGTGAAGGCAAAGAATGTAAAATAGCCTCTGAAAGGCCCCCAATTTTTGATATCTGCTTTTCTCCAAAAGTTTCATCTGGAAAGGATGCAAATATTAGAGTTGAGTCTCTTGCAGAGGGAAATATAACAGATTCTAATTCTGAATTGTCCAGTAACTCATTTTCTGGATTCTCAGCTTCCACGGGTTCTAGTGATTCATCTGATGGTTCCTCTGTATGTGAGAGCATCATCTCAAATGAGCATGACGGATCAGAGGGACATACTTTTGTTGATCCCACCCTTGACATTCCTGATAACACTATTGATGATAGCATGGGTGTAACCATGTCTTCTTCACCAAAGTTTGCTACTTTGGTTGATTCAGTAGATGGTTTTTCTACAATGCGTAAATTAAATCATACTGGACCTGGTTTTAGTAAAGAAGAGAGTAAGCTTGCATCAAATGGTAATTCAGGTTCAAGTATGTGGAAGGGGAAAACAATTGAGCCTTCTACGGTGTTTTCGGGATTCTGGGATAAAGCTCTTGATTCAAGAGGGATTAAAGATGATACTAAGAATGACACTTACCCATCCTGTTCTGATGAATCCACAGGCAAAAAGACTGCTTCTGAATCTTCATTTCACTTTCCATTCAGTACCATGCCTCCTTTGCATGTACGAGATACCAAGACAAATGATTCTGTATCTGATGATGCTTTTCCAAACTGTATTGGGAACAATATGGCAAGTTCAGGATCAGCATCGTCTGAGAATGACAACATGAATTCTTCGAAGGGGAGGAATTTCTCGTTCATCAACAGCAAAGTTTCCAATGTTAGGAGTTATGTTACTCCAAGTGGTTCTGAGTCTGATCAATTGGAATCTAAAGAAAGCTCTGGGCCACCTTTATCATCTTTCTCCCCTCAGCCCTCCAGTGTTGGCAAAAATTCAGTTTGTGCGGATGCTTTGAGCTTCCATAACTCTCAATCAACTGGCTCATCCAATCTTGTTGTGGCCAACGGTGGGAGCACCTTGAAGTCCACTGAAATTGGTTGCCTGACTTGTGAACTTGCTGATTCTAATTTAGCTTCTGTAACTGAAGAACATCATTCCAGTACAAAACAAGGGAATAATGACATTGAATCTGGCACTCGAGCTGTCACTTCCTCTCAGGTTGCTAGCTGTTCTGCAAATTCTAAGAGTGGCTTGAAAACATCTGTTTTGAAAGTTGTTGATCAGTTTAGAGGATCAAATCTGTCAAAGCACTTTCCATTAGTTGTTGGGAGTGATCTTGCTGGAAGACGTAATGACAAGAGTTTTTTCCCTTATGAATTGTTTGTCAAGCTTTATAACTCGAACAAGGTGGAGTTATGCCCATTTGGTCTTGTAAATTGTGGAAACAGTTGTTACGCTAATGCTGTACTTCAGTGCTTAGCATTTACACCACCTCTGACTGCTTATTTGCTTCAAGGATTACATTTGAAATCATGTGCAAATAAAAAATGGTGTTTCACCTGTGAATTTGAAAGATTGATATTGAAGTCAAAGGACACAAAATCTGCTGTGTCTCCTATGGGCATAATCTCCCATCTACAGAATATTGGGAGTCAGCTTGGTAATGGAAGAGAAGAAGATGCACATGAATTTCTTAGGCATGTTATTGACACAATGCAATCTGTTTGCCTTACGGAAGCTGGAGTTAATGCATCGGGCTCATTAGAAGAGGACACTACTTTAATGGGTCAAACATTTGGAGGTTACCTTCGATCAAAGATAAAATGCATGAGATGTGGAGGGAAGTCTGAGCATCAGGAAAGGATGATGGATCTGACTGTTGAGATAGAAGGCGAAATAACAACCCTGGTGGAGGCCCTTCGACGATTTACAAGCACTGAGACTTTGGATGGGGAAAACAAGTACCACTGTGTCAGATGTAAATCATATGAGAAGGCCAAGAAGAAGCTGACAGTTTCAGAGGCCCCGAATGTTCTTACAGTTGCATTAAAGAGATTTCAGTCTGGGAAATTTGGGAAGCTCAACAAGCCTATTCAATTTCCTGAAATACTTAACTTGGCACCTTTCATGAGTGGGACTAGTGATAAATCACCCATATACAGATTGTATGGGGTAGTTGTTCACTTAGATGTCATGAATGCTTCCTTTTCGGGTCACTATGTGTGCTATGTGAAGAATATCCAAAACAAGTGGTCCAAGGTTGATGACAGTGTGGTGACAGCTGTTGAATTGGATAGAGTCTTGACTAAAGGAGCATATATACTTTTCTATGCAAGGTGCTCGCCAAGGGCCCCAAGATTAATTAGGAACAGAATACTGTCCCCAGATTCAAAAAGTAAAGTCAGTGGAAAGACTCTTACAACAAAAGCAAGATATATATCTACAAATTCTGGTGTTTCTGAACATGCCAATAGTTCCATTTCTTCAGATGACTCACCTGCCTTAGCCTCTTTCTATTCAAAGTTTCACCACCTGAAAAGGATTTTGGAAGAAGACTCGTCAAGTGATAATTCATCCCTTATTAGCAGCAACTCTGATGAAGGTTCTTGTAGTACAGATAGCACCCGTGATTCAACCAACACAGATGACTTCTCCGAATATCTTTTTGGTGATTCAGGGAATGGTTGGAGTAGTGTGTGGAGGAATTCTGATTCTGACACATCCTCCTCCTCCTCATCTTCTCCCTTGAATTGGGGACATTCGCCCCTATCTGATGTGGACCGATATGATTCAGTTTCTCCCGTTGCAGCAGGCTTGCGAGGGATAGATGTTTCTCGTTTGTCTTTTAACACAACTTTACAGCATAGAAAGTTAGATAGTAGTAGGATTAATAGCAACAGTAGTAGTAGGGAGACTGACTCTTTTATGAAACTAGGATCTAACCATTTTAATGATATAGACTCTGGTGTATTATGTAGAAAGCCAGGGAAAAGAACGGATTAA

Predicted protein sequences of Glyma06g09821

Limit To All Plant Sequences

>Glyma06g09821.1   sequence type=predicted peptide   gene model=Glyma06g09821   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRVTGDLGFSSLVLVVVCVVVAVIGFVIRHKWQVSEARKEEIKRLFILAAEETARAEKEASYEYGTAVSAAPTNLCAVCYFPATARCAQCKSVRYCSFECQTVHWRQGHKLECRPPSTTHQSDGATSDLGSKVVEQGYSGIHVGKSESEGKECKIASERPPIFDICFSPKVSSGKDANIRVESLAEGNITDSNSELSSNSFSGFSASTGSSDSSDGSSVCESIISNEHDGSEGHTFVDPTLDIPDNTIDDSMGVTMSSSPKFATLVDSVDGFSTMRKLNHTGPGFSKEESKLASNGNSGSSMWKGKTIEPSTVFSGFWDKALDSRGIKDDTKNDTYPSCSDESTGKKTASESSFHFPFSTMPPLHVRDTKTNDSVSDDAFPNCIGNNMASSGSASSENDNMNSSKGRNFSFINSKVSNVRSYVTPSGSESDQLESKESSGPPLSSFSPQPSSVGKNSVCADALSFHNSQSTGSSNLVVANGGSTLKSTEIGCLTCELADSNLASVTEEHHSSTKQGNNDIESGTRAVTSSQVASCSANSKSGLKTSVLKVVDQFRGSNLSKHFPLVVGSDLAGRRNDKSFFPYELFVKLYNSNKVELCPFGLVNCGNSCYANAVLQCLAFTPPLTAYLLQGLHLKSCANKKWCFTCEFERLILKSKDTKSAVSPMGIISHLQNIGSQLGNGREEDAHEFLRHVIDTMQSVCLTEAGVNASGSLEEDTTLMGQTFGGYLRSKIKCMRCGGKSEHQERMMDLTVEIEGEITTLVEALRRFTSTETLDGENKYHCVRCKSYEKAKKKLTVSEAPNVLTVALKRFQSGKFGKLNKPIQFPEILNLAPFMSGTSDKSPIYRLYGVVVHLDVMNASFSGHYVCYVKNIQNKWSKVDDSVVTAVELDRVLTKGAYILFYARCSPRAPRLIRNRILSPDSKSKVSGKTLTTKARYISTNSGVSEHANSSISSDDSPALASFYSKFHHLKRILEEDSSSDNSSLISSNSDEGSCSTDSTRDSTNTDDFSEYLFGDSGNGWSSVWRNSDSDTSSSSSSSPLNWGHSPLSDVDRYDSVSPVAAGLRGIDVSRLSFNTTLQHRKLDSSRINSNSSSRETDSFMKLGSNHFNDIDSGVLCRKPGKRTD*

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