Glyma06g09770 - SoyBase

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Report for Sequence Feature Glyma06g09770

Feature Type:	gene_model
Chromosome:	Gm06
Start:	7315084
stop:	7319955
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g09770

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G09890	AT	Annotation by Michelle Graham. TAIR10: Rhamnogalacturonate lyase family protein \| chr1:3214237-3217386 REVERSE LENGTH=617	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0016829	GO-mf	Annotation by Michelle Graham. GO Molecular Function: lyase activity	SoyBase	N/A	ISS
GO:0030246	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carbohydrate binding	SoyBase	N/A	ISS
PF06045	PFAM	Rhamnogalacturonate lyase family	JGI		ISS
UniRef100_G7J4L9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Rhamnogalacturonate lyase n=1 Tax=Medicago truncatula RepID=G7J4L9_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K9M3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9M3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g09770

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g09770

Paralog	Evidence	Comments
Glyma04g09670	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g09770 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g092900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g09770

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g09770

Limit To All Plant Sequences

>Glyma06g09770.3   sequence type=transcript   gene model=Glyma06g09770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CACAAACTGTTTTTCTCTCCAAACGCTGTGCTTAATTAAAACCAGCCATTGCCACCATATATATATAAAGGCCATTCTTTCTTTGCATTTTAAGATAAATTCTCAGCCATTGTCTCAAACTACTCTGAATTTGTGAGATTTTTCATTGCCCACTTCTCTTGTTCACTGCAAGTACCACCATGTCGTCGCCGGGGGTGCAACTTACTATTCAAGATAATCATGTGGTGATGGAAAATGGCATACTAAAAGTCACCTTATCAAATCCTGGGGGAATTGTGACTGGAATACAGTATAATGACATCGACAACTTGCTTGAAGTTTTGAATGACGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCAACAAGTACAGGAACAAGTGGCACATTTGATGTCATCAAGGGAACAACTTTCAAAGTTGTGGTTGAAAATGAGGACCAAGTTGAGTTATCCTTCACCAGGACGTGGGACGTCTCTCGCGAGGGCAAGTTGGTTCCTTTAAATATTGATAAAAGGTTCGTAATGCTTCGTGGTTCTTCCGGCTTCTACTCATATGCAATTTATGAGCACTTAGAGGAGTGGCCAGCTTTCAATCTTGACGAAACAAGAATTGCTTTCAAACTTAGAAAGGACAAATTCCATTATATGGCGATGGCAGATAATAGACAAAGAAACATGCCTCTTCCAGATGACCGATTACCACCTAAGGGAAAAGCCCTTGCCTACCCAGAGGCAGTTCTACTAGTCAATCCCATCGAACCAGAACTTAAAGGAGAGGTGGATGACAAGTACCAATATTCATGTGACAACAAAGATAGCCAAGTTCATGGATGGATCTGCATGGATCCCGCAGTTGGATTCTGGCTAATTACGCCCAGCAATGAGTTTAGATCTGGTGGACCCCTCAAACAAAACTTAACTTCCCATGTGGGGCCTACCACTCTTGCTGTGTTTCTGAGTGCTCATTATAGCGGAGAGGATCTGGTGCCTAAGTTCAATTCTGGTGAGGCATGGAAGAAAGTTTTTGGTCCAGTTTTCATTTATTTGAATTCTCCCTATGATGGAACTGACCCCCTTAAGCTATGGGAAGACGCTAAACTACAGATGTCGGTGGAAGTTCAAAGCTGGCCTTACAGTTTTCCTGAATCAGAGGATTTCGCCAAGTGGGACGACCGTGGTAATGTTAGTGGCAGGCTTTTGGTTAGAGAGAGGTATATAAACGATGACTATGTATCAGCAAAAGGTGCCTATGTTGGCTTGGCTCCACCGGGAGACGTGGGGTCTTGGCAAAGAGAATGCAAGAATTACCAGTTTTGGGCTAGAGCGGACGATGATGGCTACTTCTCCGTCAGCAATATACGTGCTGGAGACTATAATGTGTACGCATGGGTACCTGGTTTTATTGGTGACTATAAATATGACGTAGTTATCAACATAACAGAAGGTTGTGACATCGACCTTGGTGATCTTGTATATGAACCTCCAAGAGATGGTCCAACATTGTGGGAAATTGGCATCCCTGATCGCTCAGCTGCTGAGTTCTATGTTCCTGACCCAAATCCCAAATATATCAACAAACTCTATGTTAATCACCCTGACAAGTTTAGGCAATATGGGTTATGGGAGAGATATGCAGAACTATACCCTGACAAAGACTTGATCTACACAATTGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGAAAGATGATAACACATATCAAGGAACCACATGGCAAATCAAGTTTAAGCTTGATAGCGTGAACAAAAGCAGTAGCTATAAACTGAGAGTGGCTTTGGCATCAGCAACATTATCTGAACTTCAGGTTCGAGTTAATAATCCAAAGGCACCTCGTCCTCTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCGATCGCTAGGCACGGAATTCATGGACTTTATTGGCTTTACAATGTAGGCATACCTGGAACTCAACTAGTTGAAGGAGATAATACCATCTTTTTGACACAGACCAGAGGAAATGGTCCATTTCAGGCCATCATGTATGATTATATTCGTTTGGAAGCTCCACCGTCGTCTAGCTTCAACAAGAAAAATTGAGAAATTTAATTTCTGTTTTACTAACAATATTAATTTAATCAAATCCGACGAATAAATATTGGGAATAAAGAGTACGTAGTGGAGCTTATGAAATAATGAAAATTTCGGTTTCTTTGTAGTTTGTACTTGTTTGGGTTTATAGACTGGGATCGTTCCACTATAAAAATATGTACAAGACCTTCGTTTAATATGAATTATAAAGTATTATAATAGTTAC

Coding sequences of Glyma06g09770

Limit To All Plant Sequences

>Glyma06g09770.1   sequence type=CDS   gene model=Glyma06g09770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTCGCCGGGGGTGCAACTTACTATTCAAGATAATCATGTGGTGATGGAAAATGGCATACTAAAAGTCACCTTATCAAATCCTGGGGGAATTGTGACTGGAATACAGTATAATGACATCGACAACTTGCTTGAAGTTTTGAATGACGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCAACAAGTACAGGAACAAGTGGCACATTTGATGTCATCAAGGGAACAACTTTCAAAGTTGTGGTTGAAAATGAGGACCAAGTTGAGTTATCCTTCACCAGGACGTGGGACGTCTCTCGCGAGGGCAAGTTGGTTCCTTTAAATATTGATAAAAGGTTCGTAATGCTTCGTGGTTCTTCCGGCTTCTACTCATATGCAATTTATGAGCACTTAGAGGAGTGGCCAGCTTTCAATCTTGACGAAACAAGAATTGCTTTCAAACTTAGAAAGGACAAATTCCATTATATGGCGATGGCAGATAATAGACAAAGAAACATGCCTCTTCCAGATGACCGATTACCACCTAAGGGAAAAGCCCTTGCCTACCCAGAGGCAGTTCTACTAGTCAATCCCATCGAACCAGAACTTAAAGGAGAGGTGGATGACAAGTACCAATATTCATGTGACAACAAAGATAGCCAAGTTCATGGATGGATCTGCATGGATCCCGCAGTTGGATTCTGGCTAATTACGCCCAGCAATGAGTTTAGATCTGGTGGACCCCTCAAACAAAACTTAACTTCCCATGTGGGGCCTACCACTCTTGCTGTGTTTCTGAGTGCTCATTATAGCGGAGAGGATCTGGTGCCTAAGTTCAATTCTGGTGAGGCATGGAAGAAAGTTTTTGGTCCAGTTTTCATTTATTTGAATTCTCCCTATGATGGAACTGACCCCCTTAAGCTATGGGAAGACGCTAAACTACAGATGTCGGTGGAAGTTCAAAGCTGGCCTTACAGTTTTCCTGAATCAGAGGATTTCGCCAAGTGGGACGACCGTGGTAATGTTAGTGGCAGGCTTTTGGTTAGAGAGAGGTATATAAACGATGACTATGTATCAGCAAAAGGTGCCTATGTTGGCTTGGCTCCACCGGGAGACGTGGGGTCTTGGCAAAGAGAATGCAAGAATTACCAGTTTTGGGCTAGAGCGGACGATGATGGCTACTTCTCCGTCAGCAATATACGTGCTGGAGACTATAATGTGTACGCATGGGTACCTGGTTTTATTGGTGACTATAAATATGACGTAGTTATCAACATAACAGAAGGTTGTGACATCGACCTTGGTGATCTTGTATATGAACCTCCAAGAGATGGTCCAACATTGTGGGAAATTGGCATCCCTGATCGCTCAGCTGCTGAGTTCTATGTTCCTGACCCAAATCCCAAATATATCAACAAACTCTATGTTAATCACCCTGACAAGTTTAGGCAATATGGGTTATGGGAGAGATATGCAGAACTATACCCTGACAAAGACTTGATCTACACAATTGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGAAAGAAAGATGATAACACATATCAAGGAACCACATGGCAAATCAAGTTTAAGCTTGATAGCGTGAACAAAAGCAGTAGCTATAAACTGAGAGTGGCTTTGGCATCAGCAACATTATCTGAACTTCAGGTTCGAGTTAATAATCCAAAGGCACCTCGTCCTCTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCGATCGCTAGGCACGGAATTCATGGACTTTATTGGCTTTACAATGTAGGCATACCTGGAACTCAACTAGTTGAAGGAGATAATACCATCTTTTTGACACAGACCAGAGGAAATGGTCCATTTCAGGCCATCATGTATGATTATATTCGTTTGGAAGCTCCACCGTCGTCTAGCTTCAACAAGAAAAATTGA

>Glyma06g09770.3   sequence type=CDS   gene model=Glyma06g09770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCGTCGCCGGGGGTGCAACTTACTATTCAAGATAATCATGTGGTGATGGAAAATGGCATACTAAAAGTCACCTTATCAAATCCTGGGGGAATTGTGACTGGAATACAGTATAATGACATCGACAACTTGCTTGAAGTTTTGAATGACGAATCTAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCAACAAGTACAGGAACAAGTGGCACATTTGATGTCATCAAGGGAACAACTTTCAAAGTTGTGGTTGAAAATGAGGACCAAGTTGAGTTATCCTTCACCAGGACGTGGGACGTCTCTCGCGAGGGCAAGTTGGTTCCTTTAAATATTGATAAAAGGTTCGTAATGCTTCGTGGTTCTTCCGGCTTCTACTCATATGCAATTTATGAGCACTTAGAGGAGTGGCCAGCTTTCAATCTTGACGAAACAAGAATTGCTTTCAAACTTAGAAAGGACAAATTCCATTATATGGCGATGGCAGATAATAGACAAAGAAACATGCCTCTTCCAGATGACCGATTACCACCTAAGGGAAAAGCCCTTGCCTACCCAGAGGCAGTTCTACTAGTCAATCCCATCGAACCAGAACTTAAAGGAGAGGTGGATGACAAGTACCAATATTCATGTGACAACAAAGATAGCCAAGTTCATGGATGGATCTGCATGGATCCCGCAGTTGGATTCTGGCTAATTACGCCCAGCAATGAGTTTAGATCTGGTGGACCCCTCAAACAAAACTTAACTTCCCATGTGGGGCCTACCACTCTTGCTGTGTTTCTGAGTGCTCATTATAGCGGAGAGGATCTGGTGCCTAAGTTCAATTCTGGTGAGGCATGGAAGAAAGTTTTTGGTCCAGTTTTCATTTATTTGAATTCTCCCTATGATGGAACTGACCCCCTTAAGCTATGGGAAGACGCTAAACTACAGATGTCGGTGGAAGTTCAAAGCTGGCCTTACAGTTTTCCTGAATCAGAGGATTTCGCCAAGTGGGACGACCGTGGTAATGTTAGTGGCAGGCTTTTGGTTAGAGAGAGGTATATAAACGATGACTATGTATCAGCAAAAGGTGCCTATGTTGGCTTGGCTCCACCGGGAGACGTGGGGTCTTGGCAAAGAGAATGCAAGAATTACCAGTTTTGGGCTAGAGCGGACGATGATGGCTACTTCTCCGTCAGCAATATACGTGCTGGAGACTATAATGTGTACGCATGGGTACCTGGTTTTATTGGTGACTATAAATATGACGTAGTTATCAACATAACAGAAGGTTGTGACATCGACCTTGGTGATCTTGTATATGAACCTCCAAGAGATGGTCCAACATTGTGGGAAATTGGCATCCCTGATCGCTCAGCTGCTGAGTTCTATGTTCCTGACCCAAATCCCAAATATATCAACAAACTCTATGTTAATCACCCTGACAAGTTTAGGCAATATGGGTTATGGGAGAGATATGCAGAACTATACCCTGACAAAGACTTGATCTACACAATTGGTGTTAGTGACTACACCAAAGATTGGTTCTTTGCTCAAGTTACCAGAAAGATGATAACACATATCAAGGAACCACATGGCAAATCAAGTTTAAGCTTGATAGCGTGA

Predicted protein sequences of Glyma06g09770

Limit To All Plant Sequences

>Glyma06g09770.1   sequence type=predicted peptide   gene model=Glyma06g09770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSPGVQLTIQDNHVVMENGILKVTLSNPGGIVTGIQYNDIDNLLEVLNDESNRGYWDLVWSSPTSTGTSGTFDVIKGTTFKVVVENEDQVELSFTRTWDVSREGKLVPLNIDKRFVMLRGSSGFYSYAIYEHLEEWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRLPPKGKALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWICMDPAVGFWLITPSNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFNSGEAWKKVFGPVFIYLNSPYDGTDPLKLWEDAKLQMSVEVQSWPYSFPESEDFAKWDDRGNVSGRLLVRERYINDDYVSAKGAYVGLAPPGDVGSWQRECKNYQFWARADDDGYFSVSNIRAGDYNVYAWVPGFIGDYKYDVVINITEGCDIDLGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDKFRQYGLWERYAELYPDKDLIYTIGVSDYTKDWFFAQVTRKKDDNTYQGTTWQIKFKLDSVNKSSSYKLRVALASATLSELQVRVNNPKAPRPLFSSGLIGRDNSIARHGIHGLYWLYNVGIPGTQLVEGDNTIFLTQTRGNGPFQAIMYDYIRLEAPPSSSFNKKN*

>Glyma06g09770.3   sequence type=predicted peptide   gene model=Glyma06g09770   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSSPGVQLTIQDNHVVMENGILKVTLSNPGGIVTGIQYNDIDNLLEVLNDESNRGYWDLVWSSPTSTGTSGTFDVIKGTTFKVVVENEDQVELSFTRTWDVSREGKLVPLNIDKRFVMLRGSSGFYSYAIYEHLEEWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRLPPKGKALAYPEAVLLVNPIEPELKGEVDDKYQYSCDNKDSQVHGWICMDPAVGFWLITPSNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFNSGEAWKKVFGPVFIYLNSPYDGTDPLKLWEDAKLQMSVEVQSWPYSFPESEDFAKWDDRGNVSGRLLVRERYINDDYVSAKGAYVGLAPPGDVGSWQRECKNYQFWARADDDGYFSVSNIRAGDYNVYAWVPGFIGDYKYDVVINITEGCDIDLGDLVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDKFRQYGLWERYAELYPDKDLIYTIGVSDYTKDWFFAQVTRKMITHIKEPHGKSSLSLIA*

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