Glyma06g09750 - SoyBase

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Report for Sequence Feature Glyma06g09750

Feature Type:	gene_model
Chromosome:	Gm06
Start:	7301889
stop:	7306253
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g09750

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G09920	AT	Annotation by Michelle Graham. TAIR10: TRAF-type zinc finger-related \| chr1:3224863-3226860 REVERSE LENGTH=192	SoyBase	E_val: 9.00E-90	ISS
GO:0006623	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein targeting to vacuole	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0016192	GO-bp	Annotation by Michelle Graham. GO Biological Process: vesicle-mediated transport	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR16295	Panther	TRAF-TYPE ZINC FINGER PROTEIN-RELATED	JGI		ISS
PF02176	PFAM	TRAF-type zinc finger	JGI		ISS
UniRef100_C6T0E3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6T0E3_SOYBN	SoyBase	E_val: 6.00E-145	ISS
UniRef100_G7J4M2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: TRAF-type zinc finger domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J4M2_MEDTR	SoyBase	E_val: 2.00E-100	ISS

Expression Patterns of Glyma06g09750

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g09750

Paralog	Evidence	Comments
Glyma04g09651	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g09750 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g092700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g09750

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g09750

Limit To All Plant Sequences

>Glyma06g09750.5   sequence type=transcript   gene model=Glyma06g09750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTTTCTGAATGATCTATTTAAATGGCCCAAGCAAGGTCCCAAAAGTCTCCCAAAATCAGAGTGGTTGGTTTGGTTCAACAAGAGGAATTCTCCCAAATTTTGTATTTTTCACCCAAATTTTTCCACAAAACCTAACCCTCCTCTTGTTTCACGCGCAATCCGAATCTCCATTTCTGACGAGCTTGTTAATACGCCATGGCAGCCGTGTCCGATCAAGACACTAGTGTATGCACTCACTGTGATCGGGCTATTCCTTCGGCAAATATTGATTTGCATTTTGTTCATTGCTCTCGAAACCTTGAAAGATGCCAAATTTGTGACGACATGATTCCGAAACTACTTGCTGAGGAGCACTATTTAAACACACATGCCCCGGTTGCCTGTTCGCTGTGCAGTGAAACCATGGAACGTGATATTTTAGATATCCATAGAGAGGAAAATTGTCCTAAAAGGATGATCACCTGTGAGTTCTGTGAGTTTCCTTTGCCGGCTATTGATCTGGCTGAGCATCAGGAAGTATGTGGGAATCGAACAGAACTTTGTCACCTTTGTAACAAATATGTTAGACTGCGTGAACTATACAACCATGAAGATAGTTGCAATACAATTCAAGACAATTCTGCAGGGTCTTCAAGGTATGTGAGGCCAGCTGAAAGAGATGAGGGTGCTAGAAGAAGGCCGCAGAATGATTTCTCAGGAAAGCGTCTTTTTTTCACAATAGCATTCACTGGCATTGCTGTTGTCCTCGGATCTATTTTTTTCCAGAGGAAGACAGATCTCAGCAATGTGCAATAGCAGCGGAGAGTATACGTGTTAGTGTAAATTTGCTTGATCTGTATAATTTATTTGCATACAACAGAAAGTCGAACGAGATATACTTCACCGGCGCATAAAACACATCGGCATTGTCATTGAATTATCATTTTGGTCTTGTATTTGATGGTCAGAACTGCCAAGTACCAAGAGATAAATGAGTCATTCATTACAAAGATTGATATTTGTTGTTAATCCTCCAATTATATAGGAACTGTAATATCGTTTTCGGATAAAAATTTGGTTTTTTTTTGTTAGGGTTTTATAGGACAAATTAAGACTTGTGATTTCATTGAGCACCTTAATTAGCAAGGATGAGTCAACCTCTTGGGAATTTAATAAATTTTAATCAATAATAAAGGAAGCTGACTAAAGTATTTAG

>Glyma06g09750.6   sequence type=transcript   gene model=Glyma06g09750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTTTCTGAATGATCTATTTAAATGGCCCAAGCAAGGTCCCAAAAGTCTCCCAAAATCAGAGTGGTTGGTTTGGTTCAACAAGAGGAATTCTCCCAAATTTTGTATTTTTCACCCAAATTTTTCCACAAAACCTAACCCTCCTCTTGTTTCACGCGCAATCCGAATCTCCATTTCTATCTTGTCCTAGGACGAGCTTGTTAATACGCCATGGCAGCCGTGTCCGATCAAGACACTAGTGTATGCACTCACTGTGATCGGGCTATTCCTTCGGCAAATATTGATTTGCATTTTGTTCATTGCTCTCGAAACCTTGAAAGATGCCAAATTTGTGACGACATGATTCCGAAACTACTTGCTGAGGAGCACTATTTAAACACACATGCCCCGGTTGCCTGTTCGCTGTGCAGTGAAACCATGGAACGTGATATTTTAGATATCCATAGAGAGGAAAATTGTCCTAAAAGGATGATCACCTGTGAGTTCTGTGAGTTTCCTTTGCCGGCTATTGATCTGGCTGAGCATCAGGAAGTATGTGGGAATCGAACAGAACTTTGTCACCTTTGTAACAAATATGTTAGACTGCGTGAACTATACAACCATGAAGATAGTTGCAATACAATTCAAGACAATTCTGCAGGGTCTTCAAGGTATGTGAGGCCAGCTGAAAGAGATGAGGGTGCTAGAAGAAGGCCGCAGAATGATTTCTCAGGAAAGCGTCTTTTTTTCACAATAGCATTCACTGGCATTGCTGTTGTCCTCGGATCTATTTTTTTCCAGAGGAAGACAGATCTCAGCAATGTGCAATAGCAGCGGAGAGTATACGTGTTAGTGTAAATTTGCTTGATCTGTATAATTTATTTGCATACAACAGAAAGTCGAACGAGATATACTTCACCGGCGCATAAAACACATCGGCATTGTCATTGAATTATCATTTTGGTCTTGTATTTGATGGTCAGAACTGCCAAGTACCAAGAGATAAATGAGTCATTCATTACAAAGATTGATATTTGTTGTTAATCCTCCAATTATATAGGAACTGTAATATCGTTTTCGGATAAAAATTTGGTTTTTTTTTGTTAGGGTTTTATAGGACAAATTAAGACTTGTGATTTCATTGAGCACCTTAATTAGCAAGGATGAGTCAACCTCTTGGGAATTTAATAAATTTTAATCAATAATAAAGGAAGCTGACTAAAGTATTTAG

>Glyma06g09750.7   sequence type=transcript   gene model=Glyma06g09750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ACTTTCTGAATGATCTATTTAAATGGCCCAAGCAAGGTCCCAAAAGTCTCCCAAAATCAGAGTGGTTGGTTTGGTTCAACAAGAGGAATTCTCCCAAATTTTGTATTTTTCACCCAAATTTTTCCACAAAACCTAACCCTCCTCTTGTTTCACGCGCAATCCGAATCTCCATTTCTGTAATCTCTCTCCCTCATTTTTTTTATAAAAAAAATTGATTTCTATTTTTTTGTTTTCTTTTTAGTTCTCATTTCTTTCTTTAAGATCTTGTCCTAGGACGAGCTTGTTAATACGCCATGGCAGCCGTGTCCGATCAAGACACTAGTGTATGCACTCACTGTGATCGGGCTATTCCTTCGGCAAATATTGATTTGCATTTTGTTCATTGCTCTCGAAACCTTGAAAGATGCCAAATTTGTGACGACATGATTCCGAAACTACTTGCTGAGGAGCACTATTTAAACACACATGCCCCGGTTGCCTGTTCGCTGTGCAGTGAAACCATGGAACGTGATATTTTAGATATCCATAGAGAGGAAAATTGTCCTAAAAGGATGATCACCTGTGAGTTCTGTGAGTTTCCTTTGCCGGCTATTGATCTGGCTGAGCATCAGGAAGTATGTGGGAATCGAACAGAACTTTGTCACCTTTGTAACAAATATGTTAGACTGCGTGAACTATACAACCATGAAGATAGTTGCAATACAATTCAAGACAATTCTGCAGGGTCTTCAAGGTATGTGAGGCCAGCTGAAAGAGATGAGGGTGCTAGAAGAAGGCCGCAGAATGATTTCTCAGGAAAGCGTCTTTTTTTCACAATAGCATTCACTGGCATTGCTGTTGTCCTCGGATCTATTTTTTTCCAGAGGAAGACAGATCTCAGCAATGTGCAATAGCAGCGGAGAGTATACGTGTTAGTGTAAATTTGCTTGATCTGTATAATTTATTTGCATACAACAGAAAGTCGAACGAGATATACTTCACCGGCGCATAAAACACATCGGCATTGTCATTGAATTATCATTTTGGTCTTGTATTTGATGGTCAGAACTGCCAAGTACCAAGAGATAAATGAGTCATTCATTACAAAGATTGATATTTGTTGTTAATCCTCCAATTATATAGGAACTGTAATATCGTTTTCGGATAAAAATTTGGTTTTTTTTTGTTAGGGTTTTATAGGACAAATTAAGACTTGTGATTTCATTGAGCACCTTAATTAGCAAGGATGAGTCAACCTCTTGGGAATTTAATAAATTTTAATCAATAATAAAGGAAGCTGACTAAAGTATTTAG

Coding sequences of Glyma06g09750

Limit To All Plant Sequences

>Glyma06g09750.4   sequence type=CDS   gene model=Glyma06g09750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTCCGAAACTACTTGCTGAGGAGCACTATTTAAACACACATGCCCCGGTTGCCTGTTCGCTGTGCAGTGAAACCATGGAACGTGATATTTTAGATATCCATAGAGAGGAAAATTGTCCTAAAAGGATGATCACCTGTGAGTTCTGTGAGTTTCCTTTGCCGGCTATTGATCTGGCTGAGCATCAGGAAGTATGTGGGAATCGAACAGAACTTTGTCACCTTTGTAACAAATATGTTAGACTGCGTGAACTATACAACCATGAAGATAGTTGCAATACAATTCAAGACAATTCTGCAGGGTCTTCAAGGTATGTGAGGCCAGCTGAAAGAGATGAGGGTGCTAGAAGAAGGCCGCAGAATGATTTCTCAGGAAAGCGTCTTTTTTTCACAATAGCATTCACTGGCATTGCTGTTGTCCTCGGATCTATTTTTTTCCAGAGGAAGACAGATCTCAGCAATGTGCAATAG

>Glyma06g09750.5   sequence type=CDS   gene model=Glyma06g09750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCCGTGTCCGATCAAGACACTAGTGTATGCACTCACTGTGATCGGGCTATTCCTTCGGCAAATATTGATTTGCATTTTGTTCATTGCTCTCGAAACCTTGAAAGATGCCAAATTTGTGACGACATGATTCCGAAACTACTTGCTGAGGAGCACTATTTAAACACACATGCCCCGGTTGCCTGTTCGCTGTGCAGTGAAACCATGGAACGTGATATTTTAGATATCCATAGAGAGGAAAATTGTCCTAAAAGGATGATCACCTGTGAGTTCTGTGAGTTTCCTTTGCCGGCTATTGATCTGGCTGAGCATCAGGAAGTATGTGGGAATCGAACAGAACTTTGTCACCTTTGTAACAAATATGTTAGACTGCGTGAACTATACAACCATGAAGATAGTTGCAATACAATTCAAGACAATTCTGCAGGGTCTTCAAGGTATGTGAGGCCAGCTGAAAGAGATGAGGGTGCTAGAAGAAGGCCGCAGAATGATTTCTCAGGAAAGCGTCTTTTTTTCACAATAGCATTCACTGGCATTGCTGTTGTCCTCGGATCTATTTTTTTCCAGAGGAAGACAGATCTCAGCAATGTGCAATAG

>Glyma06g09750.6   sequence type=CDS   gene model=Glyma06g09750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCCGTGTCCGATCAAGACACTAGTGTATGCACTCACTGTGATCGGGCTATTCCTTCGGCAAATATTGATTTGCATTTTGTTCATTGCTCTCGAAACCTTGAAAGATGCCAAATTTGTGACGACATGATTCCGAAACTACTTGCTGAGGAGCACTATTTAAACACACATGCCCCGGTTGCCTGTTCGCTGTGCAGTGAAACCATGGAACGTGATATTTTAGATATCCATAGAGAGGAAAATTGTCCTAAAAGGATGATCACCTGTGAGTTCTGTGAGTTTCCTTTGCCGGCTATTGATCTGGCTGAGCATCAGGAAGTATGTGGGAATCGAACAGAACTTTGTCACCTTTGTAACAAATATGTTAGACTGCGTGAACTATACAACCATGAAGATAGTTGCAATACAATTCAAGACAATTCTGCAGGGTCTTCAAGGTATGTGAGGCCAGCTGAAAGAGATGAGGGTGCTAGAAGAAGGCCGCAGAATGATTTCTCAGGAAAGCGTCTTTTTTTCACAATAGCATTCACTGGCATTGCTGTTGTCCTCGGATCTATTTTTTTCCAGAGGAAGACAGATCTCAGCAATGTGCAATAG

>Glyma06g09750.7   sequence type=CDS   gene model=Glyma06g09750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAGCCGTGTCCGATCAAGACACTAGTGTATGCACTCACTGTGATCGGGCTATTCCTTCGGCAAATATTGATTTGCATTTTGTTCATTGCTCTCGAAACCTTGAAAGATGCCAAATTTGTGACGACATGATTCCGAAACTACTTGCTGAGGAGCACTATTTAAACACACATGCCCCGGTTGCCTGTTCGCTGTGCAGTGAAACCATGGAACGTGATATTTTAGATATCCATAGAGAGGAAAATTGTCCTAAAAGGATGATCACCTGTGAGTTCTGTGAGTTTCCTTTGCCGGCTATTGATCTGGCTGAGCATCAGGAAGTATGTGGGAATCGAACAGAACTTTGTCACCTTTGTAACAAATATGTTAGACTGCGTGAACTATACAACCATGAAGATAGTTGCAATACAATTCAAGACAATTCTGCAGGGTCTTCAAGGTATGTGAGGCCAGCTGAAAGAGATGAGGGTGCTAGAAGAAGGCCGCAGAATGATTTCTCAGGAAAGCGTCTTTTTTTCACAATAGCATTCACTGGCATTGCTGTTGTCCTCGGATCTATTTTTTTCCAGAGGAAGACAGATCTCAGCAATGTGCAATAG

Predicted protein sequences of Glyma06g09750

Limit To All Plant Sequences

>Glyma06g09750.4   sequence type=predicted peptide   gene model=Glyma06g09750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MIPKLLAEEHYLNTHAPVACSLCSETMERDILDIHREENCPKRMITCEFCEFPLPAIDLAEHQEVCGNRTELCHLCNKYVRLRELYNHEDSCNTIQDNSAGSSRYVRPAERDEGARRRPQNDFSGKRLFFTIAFTGIAVVLGSIFFQRKTDLSNVQ*

>Glyma06g09750.5   sequence type=predicted peptide   gene model=Glyma06g09750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAVSDQDTSVCTHCDRAIPSANIDLHFVHCSRNLERCQICDDMIPKLLAEEHYLNTHAPVACSLCSETMERDILDIHREENCPKRMITCEFCEFPLPAIDLAEHQEVCGNRTELCHLCNKYVRLRELYNHEDSCNTIQDNSAGSSRYVRPAERDEGARRRPQNDFSGKRLFFTIAFTGIAVVLGSIFFQRKTDLSNVQ*

>Glyma06g09750.6   sequence type=predicted peptide   gene model=Glyma06g09750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAVSDQDTSVCTHCDRAIPSANIDLHFVHCSRNLERCQICDDMIPKLLAEEHYLNTHAPVACSLCSETMERDILDIHREENCPKRMITCEFCEFPLPAIDLAEHQEVCGNRTELCHLCNKYVRLRELYNHEDSCNTIQDNSAGSSRYVRPAERDEGARRRPQNDFSGKRLFFTIAFTGIAVVLGSIFFQRKTDLSNVQ*

>Glyma06g09750.7   sequence type=predicted peptide   gene model=Glyma06g09750   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAVSDQDTSVCTHCDRAIPSANIDLHFVHCSRNLERCQICDDMIPKLLAEEHYLNTHAPVACSLCSETMERDILDIHREENCPKRMITCEFCEFPLPAIDLAEHQEVCGNRTELCHLCNKYVRLRELYNHEDSCNTIQDNSAGSSRYVRPAERDEGARRRPQNDFSGKRLFFTIAFTGIAVVLGSIFFQRKTDLSNVQ*

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