Glyma06g09660 - SoyBase

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Report for Sequence Feature Glyma06g09660

Feature Type:	gene_model
Chromosome:	Gm06
Start:	7228158
stop:	7230188
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g09660

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65660	AT	Annotation by Michelle Graham. TAIR10: hydroxyproline-rich glycoprotein family protein \| chr5:26245444-26246245 REVERSE LENGTH=136	SoyBase	E_val: 1.00E-22	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_C6T524	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T524_SOYBN	SoyBase	E_val: 2.00E-86	ISS
UniRef100_G7KF59	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Hydroxyproline-rich glycoprotein n=2 Tax=Medicago truncatula RepID=G7KF59_MEDTR	SoyBase	E_val: 1.00E-16	ISS

Expression Patterns of Glyma06g09660

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g09660

Paralog	Evidence	Comments
Glyma04g09570	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g09660 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g091900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g09660

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g09660

Limit To All Plant Sequences

>Glyma06g09660.2   sequence type=transcript   gene model=Glyma06g09660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGTAAGTGCATCCTTCGTCAACTGCCCAATCAATCCAAAGCAGAGCCTCCACGTTTCTTTCTTTCTTATTAAAGCTGATGCTTTCTGTGACTTCATTCATTCAGCTGAAAGGAAATGAGGGGTAAAACAGCACTACTAACAGCAGACAAGAAAAATGGAGATTGAGGACACATCAAGTAGAGTATCTATTGCATTTCCTCTTGGCTTAGCTCTTCTTGTTGCCTTGTTATTGTTCTTTTGTTGCTTCTTTTGTTGCTGCTTGCACTGGGAAAAACTCCAACCTTTGTTTCCATTTTGTATGGTTATCGTCGATACTCAGCCTCAGACACAAGCAGACTTCACTCCCCCTCCTCACAAGCCAGGCTTTCCTGTCTTGATGATGCAGCATAACCGAGGTGAGAGCTTGCCAGTGCTGATGCCAGGAGATGAGGTTCCAAAATTCATAGCACTAGCATGCCCATGTCAGCCTCCAACAAATGAAATGATCACAATCCATGTGCAGAAGACAGCACCAAATGATTTTTGCGGCGGAGCTTAAGGGGAATCGAAGTATCGTATGGGGAATTGCTTTGCGCATCCAAAAGACTGCTTGTGCACTCAGCACTTTTTCTGTTTTTCCAAAATTACCCCTGGCAAATTTACGGATCCATAATCTGTA

Coding sequences of Glyma06g09660

Limit To All Plant Sequences

>Glyma06g09660.1   sequence type=CDS   gene model=Glyma06g09660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATTGAGGACACATCAAGTAGAGTATCTATTGCATTTCCTCTTGGCTTAGCTCTTCTTGTTGCCTTGTTATTGTTCTTTTGTTGCTTCTTTTGTTGCTGCTTGCACTGGGAAAAACTCCAACCTTTGTTTCCATTTTGTATGGTTATCGTCGATACTCAGCCTCAGACACAAGCAGACTTCACTCCCCCTCCTCACAAGCCAGGCTTTCCTGTCTTGATGATGCAGCATAACCGAGGTGAGAGCTTGCCAGTGCTGATGCCAGGAGATGAGGTTCCAAAATTCATAGCACTAGCATGCCCATGTCAGCCTCCAACAAATGAAATGATCACAATCCATGTGCAGAAGACAGCACCAAATGATTTTTGCGGCGGAGCTTAA

>Glyma06g09660.2   sequence type=CDS   gene model=Glyma06g09660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGATTGAGGACACATCAAGTAGAGTATCTATTGCATTTCCTCTTGGCTTAGCTCTTCTTGTTGCCTTGTTATTGTTCTTTTGTTGCTTCTTTTGTTGCTGCTTGCACTGGGAAAAACTCCAACCTTTGTTTCCATTTTGTATGGTTATCGTCGATACTCAGCCTCAGACACAAGCAGACTTCACTCCCCCTCCTCACAAGCCAGGCTTTCCTGTCTTGATGATGCAGCATAACCGAGGTGAGAGCTTGCCAGTGCTGATGCCAGGAGATGAGGTTCCAAAATTCATAGCACTAGCATGCCCATGTCAGCCTCCAACAAATGAAATGATCACAATCCATGTGCAGAAGACAGCACCAAATGATTTTTGCGGCGGAGCTTAA

Predicted protein sequences of Glyma06g09660

Limit To All Plant Sequences

>Glyma06g09660.1   sequence type=predicted peptide   gene model=Glyma06g09660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEIEDTSSRVSIAFPLGLALLVALLLFFCCFFCCCLHWEKLQPLFPFCMVIVDTQPQTQADFTPPPHKPGFPVLMMQHNRGESLPVLMPGDEVPKFIALACPCQPPTNEMITIHVQKTAPNDFCGGA*

>Glyma06g09660.2   sequence type=predicted peptide   gene model=Glyma06g09660   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEIEDTSSRVSIAFPLGLALLVALLLFFCCFFCCCLHWEKLQPLFPFCMVIVDTQPQTQADFTPPPHKPGFPVLMMQHNRGESLPVLMPGDEVPKFIALACPCQPPTNEMITIHVQKTAPNDFCGGA*

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