Glyma06g09610 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g09610

Feature Type:	gene_model
Chromosome:	Gm06
Start:	7170010
stop:	7172821
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g09610

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G65690	AT	Annotation by Michelle Graham. TAIR10: phosphoenolpyruvate carboxykinase 2 \| chr5:26266477-26269486 FORWARD LENGTH=670	SoyBase	E_val: 0	ISS
GO:0006094	GO-bp	Annotation by Michelle Graham. GO Biological Process: gluconeogenesis	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0004611	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoenolpyruvate carboxykinase activity	SoyBase	N/A	ISS
GO:0004612	GO-mf	Annotation by Michelle Graham. GO Molecular Function: phosphoenolpyruvate carboxykinase (ATP) activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0017076	GO-mf	Annotation by Michelle Graham. GO Molecular Function: purine nucleotide binding	SoyBase	N/A	ISS
PF01293	PFAM	Phosphoenolpyruvate carboxykinase	JGI		ISS
UniRef100_G7KF50	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Phosphoenolpyruvate carboxykinase n=1 Tax=Medicago truncatula RepID=G7KF50_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A4A5	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A4A5 related cluster n=1 Tax=unknown RepID=UPI000233A4A5	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g09610

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g09610

Paralog	Evidence	Comments
Glyma04g09510	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g09610 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g091500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g09610

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g09610

Limit To All Plant Sequences

>Glyma06g09610.1   sequence type=CDS   gene model=Glyma06g09610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCACAATATGTGCATCCGACCCACTCCTAAAGAGCTAGAGGAATTTGGAACTCCAGACTTCACTATATACAATGCAGGACTGTTCCCTTGTAATCGTTACACACACTACATGACTTCATCAACTAGTATTGACATCAACATTGCAAGGAAAGAAATGGTCATCCTTGGCACACAATATGCTGGGGAAATGAAAAAAGGTCTCTTTGGTTTAATGCACTACCTCATGCCCAAGCGCTATATTCTCTCCCTGCATTCCGGGTCCAATATGGGCAAAGATGGCGATGTTGCACTCTTTTTTGGATTATCAGGTACTGGAAAGACAACTCTTTCTACCTATCAGAACCGGTATTTAATTGGAGATGATGAGCATTGCTGGAGTGAAAATGGGGTGTCAAATATTGAAGGAGGTTGCTATGCAAAATGTGTTGATCTTTCAAAGGATAAAGAACCAGACATCTGGAATGCCATCAAATTTGGGACAGTACTCGAAAATGTTGTTTTTGACGAGCATACCCGAGAGGTAGATTTCTCGGACAAATCTGTGACTGAGAACACTCGTGCAGCATATCCTATTGAGTACATACCCAATGCTAAGATACCGTGTGTTGCTCCCCATGCAAAGAATGTCATCCTACTAGCTTGTGATGCATTTGGGGTGCTCCCCCCAGTAAGCAAGCTGAACTTGGCCCAAACAATGTACCATTTCATCAGTGGCTACACAGCCCTGGTTGCAGGGACAGAGGATGGTATAAAAGAACCACAGGCTACATTCTCTGCTTGTTTCGGGGCAGCATTTATAATGATGCCCCCTACCAAATATGCAGCAATGCTGGCCGAAAAGATGCAGAAGCACGGGGCTACTGGATGGCTTGTCAATACTGGCTGGTCAGGAGGAAGTCATGGATTAGGCAATCGAATTAAGTTAGCGTATACTAGGAAAATCATTGATGCTATTCAGTCTGACAAGAAGACCTACCAAGATACACTCTTGAAACTAGCAAGCCTATTCAAGAAGAATTTTGATGGATTCACGACCTACAAGATAGGAGGGGATCAAAAGTTGACTGAAGAGATTGTCTCTGCTGGTCCTATATTCTGA

Predicted protein sequences of Glyma06g09610

Limit To All Plant Sequences

>Glyma06g09610.1   sequence type=predicted peptide   gene model=Glyma06g09610   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MHNMCIRPTPKELEEFGTPDFTIYNAGLFPCNRYTHYMTSSTSIDINIARKEMVILGTQYAGEMKKGLFGLMHYLMPKRYILSLHSGSNMGKDGDVALFFGLSGTGKTTLSTYQNRYLIGDDEHCWSENGVSNIEGGCYAKCVDLSKDKEPDIWNAIKFGTVLENVVFDEHTREVDFSDKSVTENTRAAYPIEYIPNAKIPCVAPHAKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALVAGTEDGIKEPQATFSACFGAAFIMMPPTKYAAMLAEKMQKHGATGWLVNTGWSGGSHGLGNRIKLAYTRKIIDAIQSDKKTYQDTLLKLASLFKKNFDGFTTYKIGGDQKLTEEIVSAGPIF*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain