Glyma06g09585 - SoyBase

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Report for Sequence Feature Glyma06g09585

Feature Type:	gene_model
Chromosome:	Gm06
Start:	7139178
stop:	7164371
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g09585

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G27595	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Symplekin tight junction protein C-terminal (InterPro:IPR022075); BEST Arabidopsis thaliana protein match is: HEAT repeat-containing protein (TAIR:AT5G01400.1); Has 593 Blast hits to 297 proteins in 111 species: Archae - 0; Bacteria - 3; Metazoa - 139; Fungi - 49; Plants - 57; Viruses - 0; Other Eukaryotes - 345 (source: NCBI BLink). \| chr1:9596475-9602917 FORWARD LENGTH=961	SoyBase	E_val: 0	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
KOG1895	KOG	mRNA cleavage and polyadenylation factor II complex, subunit PTA1	JGI		ISS
PTHR15245	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR15245:SF6	Panther	gb def: T22C5.3	JGI		ISS
PF11935	PFAM	Domain of unknown function (DUF3453)	JGI		ISS
PF12295	PFAM	Symplekin tight junction protein C terminal	JGI		ISS
UniRef100_D7KBR7	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: T17H3.9 n=1 Tax=Arabidopsis lyrata subsp. lyrata RepID=D7KBR7_ARALL	SoyBase	E_val: 0	ISS
UniRef100_UPI000233A4A4	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000233A4A4 related cluster n=1 Tax=unknown RepID=UPI000233A4A4	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g09585

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g09585 not represented in the dataset	Glyma06g09585 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g09585

Paralog	Evidence	Comments
Glyma04g09485	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g09585 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g091300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g09585

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g09585

Limit To All Plant Sequences

>Glyma06g09585.1   sequence type=CDS   gene model=Glyma06g09585   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGCTCCTACCAGGGACCAAGTCCTCTCTCTCCTCGCCGCGGCCAACAACCACGGTGACCTCGCCGTTAAAACCTCATCGTTAAAACAAGCCAAAGACCTTCTTCTCTCCATCGACCCCTCCCTCGCTGCCGACCTCTTCCCTTACTTGCTCGAGCTTCAGTCTTCTCCCGAAAGCCTCGTTCGCAAATTGCTCATTCAGATAATTGAGGAGATTGGTTTTAAAGCAGCTGAGCAATCTCCTACGCTGATATCTGTACTATTAACGTTTTTACGGGACAACGATGAAATTGTTGTAAAACAGTCTATTGTTAGTGGCACAAATATCTTCTGTAGTATTTTTGAGGAGTTGATTGTGCAGTTTCAACAATATGGTAAAGTTGAGAGGTGGCTAGAAGATATTTGGGTGTGGATGCTTAAGTTCAAGGATGCCGTTTTTGGGATTGCTCTGGAGCCTGGTTCTGTTGGAATAAAGTTGCTGGCACTGAAATTCTTGGAAATGTTTGTATTACTCTTTTCATCTGACTTCAATGATGCTGAGAAATTAGCCGCAAAAGGAATTAGGCAAGCTGTTAATGTCTCATGGTTGGTTGGTCACCCTCACCCTGTTCTTGATCCAGTGGTGCTCATGTCAGATGCAAATAGGACTATTGGCATTCTATTAAATTTATTGCAGTCTGTTGGCAGTCTTCCTGGTTGCTTGACTATTGCAGTTGTAAATTGTTTAGCAGCCATCACAAGGAAAAGGCCACAACACTATGAAACTATTCTTTCAGCATTGCTTGATTTTGATCCAAATTTTCAAACAGTGAAAGGATGTCATGTTACTAGTATTCAGTACTCCTTAAGAACAGCTTTTTTGGGATTTCTTAGGTGCACTTATTCACCAATACTGGAGTCTAGAGAAAGACTAATAAGGAGCCTACGAGCTATGAATGCGGGGGATGCTGCTGATCAGGTCATTCGGCAAGTCGACAAAATGATTAAAAATGGTGATCGTTCTACCCGCGATGCACGGGTTAGCAAGGATGATCAACCATCAGCTCAGTCACCTGTTTCAGGGGAATTATCTAGAAAAAGACCTGTTCCTCTAGATAATGAACAATTGGCCAATGGTCATGATACCATCTCTAAGCGGATTCGTTCTGGTTCTGGTTCTGACTCTCACTCTACTTTACCAACTCAAATAAATGATTCTGGGCAGGATGTTAACTCTGTTAATGGAGTATCAGCTAATGTTCCTGTGCTGGATAGCGAACTAACTGCTGTGGAGCAAATGATTGCTGTGATTGGTGCTTTACTTGCTGAAGGAGAGAGAGGTGCTGAATCTCTTGAAATTCTCATTTCAAAGATTCATCCTGATCTGTTGGCTGATATTGTCATAACTAATATGAAGCACTTGCCTAATACTCCCCCACCACTAGCGAGGATTGGGAATTTACCAGTAACACGACAATTAAGCTCCCAAGTCAGTCAATCACAGGTTATAGCAGCTTCTGTTCCAATAAATTCTGTCCAGTCCTTGTCTGGTACTGCCCAAGCTTCATTCCCTTCAACTTCAACCACTGTCACTGCTACTGCTACCACTTCATTGCCATCTGACACCTCCAGCTTCAGTAACCAGCCTGCTGATTCTAAACGTGATCCACGACGGGATCCCCGGCGCCTGGATCCACGACGTGTAGTGGTAACTCCTGGAGAAGCAACTGCATCAATTGCAGATGATACTGGGGCCACAAAATTAGTGTTTGATGAACCTGTGTCTTCCATTAAGCCTGTTTCACTTCCTGTTGGGACTGCTGATGACAATACTCCATCAGATCTGACGGTCAAAATAATAAATGATGATATTGTCTCTGAAGGTTCCCCAGTTTCAGGACCTGATCGGCTAACTCCAAAAACAGAGGATCTGGAAAGGCTTGGAGATATTCATCAGATTACAGAAGCAGATACTTCCTTGGATCTCCCACTTTCTTCTACTTATTTAAGAGATGAGGATCCAAGTACAGTGAAGTTGCCAGATGATACTGAAACAATTGGGACAGATTCATCAATTTTCGAGTTTGATCAGTTTTCTCTTGATGTTCAAGTTGAATCTACATTGGAAGACACCTGTCTGGAGTTACCACAACTTCCACCTTATATTGAACTATCTAAAGAACAGGAAAGTAAGGTGAAAAACATGGCTGTTATGCGTATAATTGATTCATACAAACATTTGCATGGGACCGATTGTCAGCAGTTTTCCATGCCACTACTTGCTCGACTAGTTGCACAGATTGATGACAACGATGAGTTTATTATGATGCTGCAAAAACACATCCTGGAAGACCACTGGCGAAAGGGGCATGAACTTGTACTGCATGTTTTGTATCATCTGCACTCCCTCATGATAGTGGATTCAGTGGGAAATGCTTCATCTTCTGCTGTTTTATATGAAAAATTTCTCCTGGGAGTGGCCAAAACTTTGTTGGATTCTTTTCCAGCTTCAGACAAGTCTTTTAGTAGACTTCTTGGTGAAGTCCCACTTTTGCCAGAGTCATCCTTGAAGATTTTGAACGATCTCTGCTATTCTGATGTTATTGGTCATGATGGAAAAATTATCCGTGACATTGAACGTGTGACTCAAGGCCTAGGTGCTATCTGGAGTTTAATTTTGGGGCGTCCGCAAAATCGTCAAGCCTGCTTAGGAATAGCATTGAAGTGTGCTGTTCACCCACAGGATGATATTCGAGCAAAAGCTATTCGGCTGGTGACAAACAAGCTCTTTCAGCTTAATTACATATCAGGAGATGTTGAAAAATTTGCAACAAAAATGCTGCTTTCTGCGGTAGAGCATGAAGTTTCAGATACAGGTCTTTTGCAATCTGGACATACTGAACAAAGAGCCGAGGCAGAGATTGAAAGTCATGAAATAAGTACTTCACAGGTAGAATCCACAATTTCTGAAATTGACTCTGCTATAGTTGCTAAACCATCAATTCAAAGCGTTCCATCTATATCATTTTCTGAAGCTCAACGCCTCATTTCTTTGTTTTTTGCTTTATGTACAAAGAAATCCGGTCTTCTTCAGATTGTATTTAGCGTGTATGGGCAAGCCCCGAAAACTGTAAAACAGGCTTTTCATCGCCACATTCCTATTGTTGTGAGGGCGTTAGGGCAATCTTATTCTGAATTGCTCCGTATCATATCTGATCCACCACAAGGAAGTGAAAATCTTCTGACATTGGTACTGCAAATATTGACACAAGACACGACGCCATCTTCTGATTTGATATCTACCGTTAAACGTTTGTATGAAACTAAATTTAAGGATGTTACAATTCTTGTTCCGTTACTGTCTTCGCTTTCCAAACAAGAGGTTTTACCAATATTCCCTCGGCTTGTTGATCTTCCATTGGAAAAGTTTCAAAGAGCACTTGCTCACATACTACAGGGTTCGGCTCATACGGGTCCAGCTTTAACACCTGTAGAAGTGTTGGTTGCAATCCATGGAATTGTTCCAGAGAAGGATGGCCTTGCACTTAAGAAGATAACAGATGCTTGCTCGGCTTGTTTTGAGCAACGCACAGTGTTCACACAACAGGTTCTGGCGAAGGCATTGAACCAGATGGTTGATCAAACTCCACTGCCGCTACTTTTCATGAGAACAGTTATTCAGGCAATTGATGCTTTTCCTGCACTGGTTGACTTTGTTATGGAGATACTCTCAAAACTTGTGTCTAGACAGGTGTGGCGTATGCCAAAACTTTGGGTTGGTTTCTTAAAGTGTGTATATCAGACACAGCCACGATCTTTTCATGTATTATTGCAGTTGCCACCTCAACAACTGGAAAGTGCACTCAACAGGCATGCTAATCTCAGAGGTCCCCTTGCTTCTTATGCCAGCCAACCAACTGTAAAATCATCACTTAGTAGATCAACTTTAGCAGTTCTGGGTCTTGCAAATGAAACTCATGTGCAGCAACATTTGTCATCTTCGTTACACTCTTCTGACACAAGTTCTTCACTTCACGAAGCAACTCTGACGTGA

Predicted protein sequences of Glyma06g09585

Limit To All Plant Sequences

>Glyma06g09585.1   sequence type=predicted peptide   gene model=Glyma06g09585   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAAPTRDQVLSLLAAANNHGDLAVKTSSLKQAKDLLLSIDPSLAADLFPYLLELQSSPESLVRKLLIQIIEEIGFKAAEQSPTLISVLLTFLRDNDEIVVKQSIVSGTNIFCSIFEELIVQFQQYGKVERWLEDIWVWMLKFKDAVFGIALEPGSVGIKLLALKFLEMFVLLFSSDFNDAEKLAAKGIRQAVNVSWLVGHPHPVLDPVVLMSDANRTIGILLNLLQSVGSLPGCLTIAVVNCLAAITRKRPQHYETILSALLDFDPNFQTVKGCHVTSIQYSLRTAFLGFLRCTYSPILESRERLIRSLRAMNAGDAADQVIRQVDKMIKNGDRSTRDARVSKDDQPSAQSPVSGELSRKRPVPLDNEQLANGHDTISKRIRSGSGSDSHSTLPTQINDSGQDVNSVNGVSANVPVLDSELTAVEQMIAVIGALLAEGERGAESLEILISKIHPDLLADIVITNMKHLPNTPPPLARIGNLPVTRQLSSQVSQSQVIAASVPINSVQSLSGTAQASFPSTSTTVTATATTSLPSDTSSFSNQPADSKRDPRRDPRRLDPRRVVVTPGEATASIADDTGATKLVFDEPVSSIKPVSLPVGTADDNTPSDLTVKIINDDIVSEGSPVSGPDRLTPKTEDLERLGDIHQITEADTSLDLPLSSTYLRDEDPSTVKLPDDTETIGTDSSIFEFDQFSLDVQVESTLEDTCLELPQLPPYIELSKEQESKVKNMAVMRIIDSYKHLHGTDCQQFSMPLLARLVAQIDDNDEFIMMLQKHILEDHWRKGHELVLHVLYHLHSLMIVDSVGNASSSAVLYEKFLLGVAKTLLDSFPASDKSFSRLLGEVPLLPESSLKILNDLCYSDVIGHDGKIIRDIERVTQGLGAIWSLILGRPQNRQACLGIALKCAVHPQDDIRAKAIRLVTNKLFQLNYISGDVEKFATKMLLSAVEHEVSDTGLLQSGHTEQRAEAEIESHEISTSQVESTISEIDSAIVAKPSIQSVPSISFSEAQRLISLFFALCTKKSGLLQIVFSVYGQAPKTVKQAFHRHIPIVVRALGQSYSELLRIISDPPQGSENLLTLVLQILTQDTTPSSDLISTVKRLYETKFKDVTILVPLLSSLSKQEVLPIFPRLVDLPLEKFQRALAHILQGSAHTGPALTPVEVLVAIHGIVPEKDGLALKKITDACSACFEQRTVFTQQVLAKALNQMVDQTPLPLLFMRTVIQAIDAFPALVDFVMEILSKLVSRQVWRMPKLWVGFLKCVYQTQPRSFHVLLQLPPQQLESALNRHANLRGPLASYASQPTVKSSLSRSTLAVLGLANETHVQQHLSSSLHSSDTSSSLHEATLT*

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