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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G27600 | AT | Annotation by Michelle Graham. TAIR10: Nucleotide-diphospho-sugar transferases superfamily protein | chr1:9604083-9605881 REVERSE LENGTH=394 | SoyBase | E_val: 2.00E-179 | ISS |
| GO:0006486 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein glycosylation | SoyBase | N/A | ISS |
| GO:0009834 | GO-bp | Annotation by Michelle Graham. GO Biological Process: secondary cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0010417 | GO-bp | Annotation by Michelle Graham. GO Biological Process: glucuronoxylan biosynthetic process | SoyBase | N/A | ISS |
| GO:0010584 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pollen exine formation | SoyBase | N/A | ISS |
| GO:0005794 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0015018 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity | SoyBase | N/A | ISS |
| GO:0016757 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups | SoyBase | N/A | ISS |
| GO:0042285 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: xylosyltransferase activity | SoyBase | N/A | ISS |
| KOG1476 | KOG | Beta-1,3-glucuronyltransferase B3GAT1/SQV-8 | JGI | ISS | |
| PTHR10896 | Panther | BETA-1,3-GLUCURONYLTRANSFERASE | JGI | ISS | |
| PTHR10896:SF1 | Panther | BETA-1,3-GLUCURONYLTRANSFERASE-RELATED | JGI | ISS | |
| PF03360 | PFAM | Glycosyltransferase family 43 | JGI | ISS | |
| UniRef100_I1K9K2 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K9K2_SOYBN | SoyBase | E_val: 0 | ISS |
| UniRef100_Q50HW4 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Beta-1,3-glucuronosyltransferase n=1 Tax=Medicago truncatula RepID=Q50HW4_MEDTR | SoyBase | E_val: 0 | ISS |
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Glyma06g09560 not represented in the dataset |
Glyma06g09560 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g091200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g09560.1 sequence type=CDS gene model=Glyma06g09560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCCTCGTTCCGACGGACTCTGTCGCCGGCGTATCCCGATCGCCAGTACCTTAACGGTTCGTTTTCAGTCTCCTCTCCGTCGCACAAGCTCCCGTCCTCAAACGCAAAATACTCCTCGCCGCTGCCGGAGATTGCGGCGGCGTTTCGTCGTCTCGCCGGCGGAGTGTTCACGCGCCGGCACGGTCGGAAAGGCCAGTGGAGGCGCGTGGCATTCAGGTGCGTGCTTTGCTTCTTCGTAGGGTTCTTGCTGGGCATGTTCCCGTTCGGCCACGTGTCGGAGGACGTTCGCTCGCACGAAATCTCGTTTGAGATGAAGCCGCCGCCGCTGCCGCGCGCCGCCGCGAACAACGCGCAGCAGCTGCTCCGGGAAGAACGCGTGCTGCGGAATCGCGTGGAGAGAGAGGGTTTCGTGGTCGATCCGGTGAGTTTAAGCGCCGAGAGGGAGTGGCAGAGCGAGAGGTTCGATTTCGCGCCGAAGAAGCCGCTGATTGTGGTGACGCCGACGTACGAGCGCACGTTTCAGGCGTATTTCCTGAATCGGCTGGGGCAGGTGCTGCGGCTGGTGCCGCCGCCGGTGGTGTGGATTGTGGTGGAGATGAAGGCGGCGTCGATGGAGACAGCGGAGGTGCTGAGGAAGACGGGCGTGATGTATAGGCATTTGGTGTGCAATAAGAATTTGACGGATGTGAAGGACAGAGGGGTTCATCAGAGGAACACAGCGTTGGAACACATTGAGCATCATAGGCTTGATGGAATTGTTTACTTTGCGGATGATGATAATGTGTATTCTCTCGAGTTGTTTGACGCCTTGAGAGATATCAGCCGCTTTGGCACTTGGCCTGTTGCCATGCTTGTGCCAAGCAAGAACAAGGCCATTTTGGAGGGTCCTGTATGCAATGCAAGCCAAGTGATTGGATGGCATACAAATGAGAAAAGTAAAAGACTTCGTAGATTTCATGTTGATATGTCTGGATTTGCATTCAACAGCACAATCTTGTGGGATCCAAAACGATGGCAACGCCCTTCTTCAAATCCCATACGACAGTTAGACACAGTGAAGGAGGGTTTTCAAGAGACCACCTTTATAGAACAATTGGTGGAAGATGAAAGTCAAATGGAAGGTTCACCTCCTGGTTGTTCAAAAATATTGAATTGGCATCTCCATTTGACTGCCCATAATATAGTTTACCCAAAAGGTTGGGTGCTTCAGAAAAACCTAGATGCTGTCATACCTGTCAAGTAA
>Glyma06g09560.1 sequence type=predicted peptide gene model=Glyma06g09560 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MASFRRTLSPAYPDRQYLNGSFSVSSPSHKLPSSNAKYSSPLPEIAAAFRRLAGGVFTRRHGRKGQWRRVAFRCVLCFFVGFLLGMFPFGHVSEDVRSHEISFEMKPPPLPRAAANNAQQLLREERVLRNRVEREGFVVDPVSLSAEREWQSERFDFAPKKPLIVVTPTYERTFQAYFLNRLGQVLRLVPPPVVWIVVEMKAASMETAEVLRKTGVMYRHLVCNKNLTDVKDRGVHQRNTALEHIEHHRLDGIVYFADDDNVYSLELFDALRDISRFGTWPVAMLVPSKNKAILEGPVCNASQVIGWHTNEKSKRLRRFHVDMSGFAFNSTILWDPKRWQRPSSNPIRQLDTVKEGFQETTFIEQLVEDESQMEGSPPGCSKILNWHLHLTAHNIVYPKGWVLQKNLDAVIPVK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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